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Dev v2 #125

Merged
merged 116 commits into from
Mar 25, 2024
Merged

Dev v2 #125

merged 116 commits into from
Mar 25, 2024

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hvasbath
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@hvasbath hvasbath commented Dec 2, 2023 •
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include:

  • bem mode, allowing for stress boundary conditions for geodetic data only
  • allow for mixed source type (e.g. MTSource and RectangularSource) sampling
  • adopted ruff linting
  • replace nose with pytest testing
  • added parameter defaults module and config functionality
  • use pymc v5 and pytensor instead of theano
  • fix tests
  • add example for BEM modeling to Docs
  • add example for AmplitudeSpectra modeling to Docs

@hvasbath
WIP: init BEM module with BEM engine
ee84900
@hvasbath
bem: added test for BEM engine, now running
d4b0067
@hvasbath
WIP allow for mixed source type setups
aa2981c
@hvasbath
bem: refactored parameter bounds into separate module, bem init working
dff2e7d
@hvasbath
added defaults module
52c5008
@hvasbath
bem.sources: refactor node points into dataclass
7ca4c4a
@hvasbath
bem.sources: use only Origin dataclass and bottom origin
82ef053
@hvasbath
test: update bem source test
2e66ed0
@hvasbath
config: point2source mapping, added test
e88f862
@hvasbath
utility.split_point: refactored for mixed source type setups
d0e5698 
n_sources: refactored from int to list of ints
@hvasbath
bem: WIP on the road to plot geodetic synthetics
93f9721
@hvasbath
geodetic: fix latitude longitude ratio plots, weighting, bem source o…
62edae3 
…rigin update
@hvasbath
config: mixed source type mapping as object instead of dict
d2d633d
@hvasbath
bem: convert traction [Pa] to [MPa] to avoid proposal covariance non …
e84203d 
…pos. def
@hvasbath
bem.sources: DiskBEMSource added outline method for plotting
95e814f 
bem.base: BEMEngine added get_store method
@hvasbath
plotting.marginals: enable correlation_hist plot for bem mode
889761e
@hvasbath
beat.clone: working again with bem
623b6d4 
bem.sources: fix proper origin updating for BEMSources
@hvasbath
plotting.common: refactored into save_figs and plot_exists functions
4bd73e5 
plotting.bem: WIP added slip_distribution plot
@hvasbath
plotting.bem: added slip_distribution_3d for triangular sources
e9e2bce 
bem.sources: get consistent triangle orientations for RFSource
@hvasbath
bem: major fixes to strain to stress conversion
8f2afe6 
plotting.bem: add debug to slip_distribution_3d to show patch idxs and quivers for unit vecs
@hvasbath
defaults: use MPa as traction units
a41e7cc
@hvasbath
parallel: use multiprocessing context for parallel GPU processes
8796778
@hvasbath
plotting.bem: slip_distributino_3d polishing
289f077
@hvasbath
parallel: mp context usage
c4e28bd
@hvasbath
plotting.bem: do not rasterize PatchCollection
0edbe67
@hvasbath
bem.sources: refactor ellipse outline, implement ringfault outline
046f9d0
@hvasbath
bem.sources: flip Disk outline
3673b50
@hvasbath
plotting.common: scale_axes allow for precision argument of axes tick…
9e4a663 
… labels
@hvasbath
beat: introduce environment variable NUM_THREADS
5caa57e
@hvasbath
sampler.pt: delay import of MPI
a6e8b61
hvasbath and others added 29 commits January 25, 2024 13:49
@hvasbath
cleanup
7c754d1
@hvasbath
WIP: debugging ffi mode
da2dba4
@hvasbath
ffi: running again, tested static
e30789b 
- cleaning directory also for last stage
- heart.init_geodetic targets add updating of local coordinate system
- backend.ArrayStepSharedLLK rearrange input point to adhere to value_vars
- ffi.get_magnitude check if moment/slips are zero
@hvasbath
github actions: update to node-20 version
1135a22
@hvasbath
adjust pre-commit action
2e0d71c
@hvasbath
workflow: revert to v3 artifact; ruff formatting; setup.py version bump
9d0db2e
@hvasbath
WIP fixing tests, getting PT to run
bb42f2c
@hvasbath
pt: working again in new version
680a7d3
@hvasbath
tests: fixing tests tbc ...
222ae71
@hvasbath
remove interseismic module and test, fix test_heart
053c4f5
@hvasbath
models.geodetic: remove deprecated InterseismicComposite, fix test_la…
7c57c56 
…placian
@hvasbath
tests: fix test_sampler, refactor resolution based subsampling test
e1ee51a
@hvasbath
tests/test_models fixed to work with pytensor
53bcd09
@hvasbath
WIP tests/test_ffi_gfstacking reformatting needs fix batched_dot chan…
9bbf712 
…ged in pytensor
@hvasbath
tests: test_ffi_gfstacking cleanup and working
85991f4
@hvasbath
tests: ruffing and cleanup fastsweep, sources, backend, distributed, …
5095907 
…proposals, paripool
@hvasbath
voronoi: ruffing
edea915
@hvasbath
docs: updated all installation instructions
3df4de5
@hvasbath
backend: update extract_bounds_from_summary to new summary format
c90d43a
@hvasbath
models.geodetic: move get_pyrocko_events to source composite
043a208
@hvasbath
beat: set default of stage_number to -1
d4a9ff1
@hvasbath
MixedSourceType, MultiEvent setup compat, utilitíes not fully functional
450ec08
@hvasbath
defaults: fix erroneous Lune Co-latitude defaults
ecf1404
@hvasbath
plotting.seismic: extract_mt_components fix for multi-source plotting
f449bb0
@hvasbath
Update CHANGELOG.md
9d2d62b
@hvasbath
pyproject.toml: update python version requirements
1780058
@hvasbath
CHANGELOG.md: remove trailing white-space
c9bda18
@hvasbath
plotting.seismic: fix station_var_red_plot for empty multi-event
85db0bc
@hvasbath
beat.summarize: allow summarize --calc_dervied for duplicate varnames
539972f
@hvasbath hvasbath merged commit 7fb522d into master Mar 25, 2024
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