Add new template 'lightweight-thymus'

[sooheelee]

No description provided.

[sooheelee]

Hi @jpuerto-psc @gesinaphillips and @lchoy. I have added a workspace template that represents my recent HuBMAP Hackathon (winning) submission. The template actually pulls the main analysis jupyter notebook and some small text files from https://github.com/sooheelee/notebooks/tree/main/hubmap-hackathon-2024. May I please get a review?

[thomcsmits]

@sooheelee Can we, instead of copying over a notebook from another github repo, use that notebook directly here as a template? This gives us more stability, such that that notebook doesn't suddenly change.

[sooheelee]

Hi @thomcsmits. That is certainly possible and I can change things to consolidate to one notebook. I do want to point out the risk of my repo notebook changing is nil as (i) I created the project specifically for its use in HuBMAP workspaces and (ii) I am a paying github user.

[sooheelee]

@thomcsmits, the switched out notebook is now available for your review. Thank you.

[thomcsmits]

@sooheelee I think the convert-notebook.py got some unexpected format when you ran it. Because of this, I am not able to reverse it and open this as a notebook. Can you add the .ipynb file to this PR? (Or send it to me on slack / email) Thanks!

[sooheelee]

@thomcsmits the .ipynb is available at https://github.com/sooheelee/notebooks/blob/main/hubmap-hackathon-2024/shlee-hh-lightweight-thymus-20241004.ipynb.

[sooheelee]

Hi @thomcsmits, wondering if you are set for the review or if I can clarify/add anything more?