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trivial cleanup in builder_factory #67

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trivial cleanup in builder_factory #67

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19 changes: 9 additions & 10 deletions src/portal_visualization/builder_factory.py
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Original file line number Diff line number Diff line change
Expand Up @@ -19,32 +19,31 @@


def get_view_config_builder(entity, get_assay):
data_types = entity["data_types"]
data_types = entity['data_types']
assay_objs = [get_assay(dt) for dt in data_types]
assay_names = [assay.name for assay in assay_objs]
hints = [hint for assay in assay_objs for hint in assay.vitessce_hints]
dag_names = [dag['name']
for dag in entity['metadata']['dag_provenance_list'] if 'name' in dag]
if "is_image" in hints:
dag_names = [dag.get('name') for dag in entity['metadata']['dag_provenance_list']]
if 'is_image' in hints:
if 'sprm' in hints and 'anndata' in hints:
return MultiImageSPRMAnndataViewConfBuilder
if "codex" in hints:
if ('sprm-to-anndata.cwl' in dag_names):
if 'codex' in hints:
if 'sprm-to-anndata.cwl' in dag_names:
return StitchedCytokitSPRMViewConfBuilder
return TiledSPRMViewConfBuilder
if SEQFISH in assay_names:
return SeqFISHViewConfBuilder
if MALDI_IMS in assay_names:
return IMSViewConfBuilder
return ImagePyramidViewConfBuilder
if "rna" in hints:
if 'rna' in hints:
# This is the zarr-backed anndata pipeline.
if "anndata-to-ui.cwl" in dag_names:
if "salmon_rnaseq_slideseq" in data_types:
if 'anndata-to-ui.cwl' in dag_names:
if 'salmon_rnaseq_slideseq' in data_types:
return SpatialRNASeqAnnDataZarrViewConfBuilder
return RNASeqAnnDataZarrViewConfBuilder
return RNASeqViewConfBuilder
if "atac" in hints:
if 'atac' in hints:
return ATACSeqViewConfBuilder
return NullViewConfBuilder

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