Production deploy -- fa06411

hubmapconsortium · Feb 22, 2021 · 3270242 · 3270242
1 parent ce0577e
commit 3270242
Show file tree

Hide file tree

Showing 42 changed files with 217 additions and 164 deletions.
diff --git a/0-es2015.worker.js b/0-es2015.worker.js
diff --git a/0-es5.worker.js b/0-es5.worker.js
diff --git a/assets/icons/icons-organs_colon.svg b/assets/icons/icons-organs_colon.svg
diff --git a/docs/classes/HuBMAPEntity.html b/docs/classes/HuBMAPEntity.html
@@ -1285,7 +1285,7 @@ <h3 id="methods">
   RK: [RUI_ORGANS.body, RUI_ORGANS.kidney, RUI_ORGANS.right_kidney],
   LK: [RUI_ORGANS.body, RUI_ORGANS.kidney, RUI_ORGANS.left_kidney],
   HT: [RUI_ORGANS.body, RUI_ORGANS.heart],
-  LI: [RUI_ORGANS.body, RUI_ORGANS.colon], // large_intestine
+  LI: [RUI_ORGANS.body, RUI_ORGANS.large_intestine], // large_intestine
   SI: [RUI_ORGANS.body, RUI_ORGANS.small_instestine],
   LL: [RUI_ORGANS.body, RUI_ORGANS.lung, RUI_ORGANS.left_lung],
   RL: [RUI_ORGANS.body, RUI_ORGANS.lung, RUI_ORGANS.right_lung],
@@ -1510,7 +1510,7 @@ <h3 id="methods">
       if (assayType) {
         assayTypes.set(assayType, e);
       }
-      if (e.contains_human_genetic_sequences &#x3D;&#x3D;&#x3D; &#x27;yes&#x27;) {
+      if (e.contains_human_genetic_sequences &#x3D;&#x3D;&#x3D; &#x27;yes&#x27; || e.contains_human_genetic_sequences &#x3D;&#x3D;&#x3D; true) {
         containsSequence &#x3D; true;
       }
     }

diff --git a/docs/components/BlockSizeInputComponent.html b/docs/components/BlockSizeInputComponent.html
@@ -500,7 +500,7 @@ <h3 id="methods">
 
     <div class="tab-pane fade " id="c-templateData">
         <pre class="line-numbers"><code class="language-html">&lt;div class&#x3D;&quot;header&quot;&gt;
-  &lt;span class&#x3D;&quot;text title&quot;&gt;Tissue Block Size (mm)&lt;/span&gt;
+  &lt;span class&#x3D;&quot;text title&quot;&gt;Tissue Block Dimensions (mm)&lt;/span&gt;
   &lt;div class&#x3D;&quot;filler&quot;&gt;&lt;/div&gt;
   &lt;mat-icon matRipple [matRippleCentered]&#x3D;&quot;true&quot; [matRippleUnbounded]&#x3D;&quot;true&quot; class&#x3D;&quot;icon refresh&quot; (click)&#x3D;&quot;refreshBlockSize()&quot;&gt;refresh&lt;/mat-icon&gt;
 &lt;/div&gt;
@@ -509,19 +509,19 @@ <h3 id="methods">
   &lt;mat-form-field class&#x3D;&quot;field&quot; floatLabel&#x3D;&quot;always&quot;&gt;
     &lt;mat-label class&#x3D;&quot;text label&quot;&gt;Width (X)&lt;/mat-label&gt;
     &lt;input matInput class&#x3D;&quot;input&quot; type&#x3D;&quot;number&quot; placeholder&#x3D;&quot;&quot; [value]&#x3D;&quot;blockSize.x&quot;
-           (input)&#x3D;&quot;updateBlockSizes($event, &#x27;x&#x27;)&quot;&gt;
+           (input)&#x3D;&quot;updateBlockSizes($event, &#x27;x&#x27;)&quot; matTooltip&#x3D;&quot;Enter tissue block width.&quot;&gt;
   &lt;/mat-form-field&gt;
 
   &lt;mat-form-field class&#x3D;&quot;field&quot; floatLabel&#x3D;&quot;always&quot;&gt;
     &lt;mat-label class&#x3D;&quot;text label&quot;&gt;Height (Y)&lt;/mat-label&gt;
     &lt;input matInput class&#x3D;&quot;input&quot; type&#x3D;&quot;number&quot; placeholder&#x3D;&quot;&quot; [value]&#x3D;&quot;blockSize.y&quot;
-           (input)&#x3D;&quot;updateBlockSizes($event, &#x27;y&#x27;)&quot;&gt;
+           (input)&#x3D;&quot;updateBlockSizes($event, &#x27;y&#x27;)&quot; matTooltip&#x3D;&quot;Enter tissue block height.&quot;&gt;
   &lt;/mat-form-field&gt;
 
   &lt;mat-form-field class&#x3D;&quot;field&quot; floatLabel&#x3D;&quot;always&quot;&gt;
     &lt;mat-label class&#x3D;&quot;text label&quot;&gt;Depth (Z)&lt;/mat-label&gt;
     &lt;input matInput class&#x3D;&quot;input&quot; type&#x3D;&quot;number&quot; placeholder&#x3D;&quot;&quot; [value]&#x3D;&quot;blockSize.z&quot;
-           (input)&#x3D;&quot;updateBlockSizes($event, &#x27;z&#x27;)&quot;&gt;
+           (input)&#x3D;&quot;updateBlockSizes($event, &#x27;z&#x27;)&quot; matTooltip&#x3D;&quot;Enter tissue block depth.&quot;&gt;
   &lt;/mat-form-field&gt;
 &lt;/div&gt;
 </code></pre>
@@ -600,7 +600,7 @@ <h3 id="methods">
 <script src="../js/libs/htmlparser.js"></script>
 <script src="../js/libs/deep-iterator.js"></script>
 <script>
-        var COMPONENT_TEMPLATE = '<div><div class="header">  <span class="text title">Tissue Block Size (mm)</span>  <div class="filler"></div>  <mat-icon matRipple [matRippleCentered]="true" [matRippleUnbounded]="true" class="icon refresh" (click)="refreshBlockSize()">refresh</mat-icon></div><div class="size-inputs">  <mat-form-field class="field" floatLabel="always">    <mat-label class="text label">Width (X)</mat-label>    <input matInput class="input" type="number" placeholder="" [value]="blockSize.x"           (input)="updateBlockSizes($event, \'x\')">  </mat-form-field>  <mat-form-field class="field" floatLabel="always">    <mat-label class="text label">Height (Y)</mat-label>    <input matInput class="input" type="number" placeholder="" [value]="blockSize.y"           (input)="updateBlockSizes($event, \'y\')">  </mat-form-field>  <mat-form-field class="field" floatLabel="always">    <mat-label class="text label">Depth (Z)</mat-label>    <input matInput class="input" type="number" placeholder="" [value]="blockSize.z"           (input)="updateBlockSizes($event, \'z\')">  </mat-form-field></div></div>'
+        var COMPONENT_TEMPLATE = '<div><div class="header">  <span class="text title">Tissue Block Dimensions (mm)</span>  <div class="filler"></div>  <mat-icon matRipple [matRippleCentered]="true" [matRippleUnbounded]="true" class="icon refresh" (click)="refreshBlockSize()">refresh</mat-icon></div><div class="size-inputs">  <mat-form-field class="field" floatLabel="always">    <mat-label class="text label">Width (X)</mat-label>    <input matInput class="input" type="number" placeholder="" [value]="blockSize.x"           (input)="updateBlockSizes($event, \'x\')" matTooltip="Enter tissue block width.">  </mat-form-field>  <mat-form-field class="field" floatLabel="always">    <mat-label class="text label">Height (Y)</mat-label>    <input matInput class="input" type="number" placeholder="" [value]="blockSize.y"           (input)="updateBlockSizes($event, \'y\')" matTooltip="Enter tissue block height.">  </mat-form-field>  <mat-form-field class="field" floatLabel="always">    <mat-label class="text label">Depth (Z)</mat-label>    <input matInput class="input" type="number" placeholder="" [value]="blockSize.z"           (input)="updateBlockSizes($event, \'z\')" matTooltip="Enter tissue block depth.">  </mat-form-field></div></div>'
     var COMPONENTS = [{'name': 'AppComponent', 'selector': 'ccf-root'},{'name': 'AppComponent', 'selector': 'ccf-root'},{'name': 'BlockSizeInputComponent', 'selector': 'ccf-block-size-input'},{'name': 'BodyUiComponent', 'selector': 'ccf-body-ui'},{'name': 'BodyUiComponent', 'selector': 'ccf-body-ui'},{'name': 'CheckboxComponent', 'selector': 'ccf-checkbox'},{'name': 'ColorBarComponent', 'selector': 'ccf-color-bar'},{'name': 'ColorPickerLauncherComponent', 'selector': 'ccf-color-picker-launcher'},{'name': 'ColorSchemeContentsComponent', 'selector': 'ccf-color-scheme-contents'},{'name': 'ColorSchemePopupComponent', 'selector': 'ccf-color-scheme-popup'},{'name': 'ContainerComponent', 'selector': 'ccf-drawer-container'},{'name': 'ContainerComponent', 'selector': 'ccf-drawer-container'},{'name': 'ContentComponent', 'selector': 'ccf-content'},{'name': 'ContentComponent', 'selector': 'ccf-drawer-content'},{'name': 'ContentComponent', 'selector': 'ccf-drawer-content'},{'name': 'DecoratedTextComponent', 'selector': 'ccf-decorated-text'},{'name': 'DetailsLabelComponent', 'selector': 'ccf-details-label'},{'name': 'DrawerComponent', 'selector': 'ccf-drawer'},{'name': 'DrawerComponent', 'selector': 'ccf-drawer'},{'name': 'DropdownComponent', 'selector': 'ccf-dropdown'},{'name': 'DualSliderComponent', 'selector': 'ccf-dual-slider'},{'name': 'ExtractionSetDropdownComponent', 'selector': 'ccf-extraction-set-dropdown'},{'name': 'FiltersContentComponent', 'selector': 'ccf-filters-content'},{'name': 'FiltersPopoverComponent', 'selector': 'ccf-filters-popover'},{'name': 'HeaderComponent', 'selector': 'ccf-header'},{'name': 'HeaderComponent', 'selector': 'ccf-header'},{'name': 'ImageViewerAccordionComponent', 'selector': 'ccf-image-viewer-accordion'},{'name': 'ImageViewerContentComponent', 'selector': 'ccf-image-viewer-content'},{'name': 'ImageViewerLayersComponent', 'selector': 'ccf-image-viewer-layers'},{'name': 'ImageViewerLegendComponent', 'selector': 'ccf-image-viewer-legend'},{'name': 'ImageViewerPopoverComponent', 'selector': 'ccf-image-viewer-popover'},{'name': 'InfoButtonComponent', 'selector': 'ccf-info-button'},{'name': 'InfoButtonComponent', 'selector': 'ccf-info-button'},{'name': 'InfoDialogComponent', 'selector': 'ccf-info-dialog'},{'name': 'InfoDialogComponent', 'selector': 'ccf-info-dialog'},{'name': 'LabeledSlideToggleComponent', 'selector': 'ccf-labeled-slide-toggle'},{'name': 'LeftSidebarComponent', 'selector': 'ccf-left-sidebar'},{'name': 'NameInputComponent', 'selector': 'ccf-name-input'},{'name': 'OntologySearchComponent', 'selector': 'ccf-ontology-search'},{'name': 'OntologySelectionComponent', 'selector': 'ccf-ontology-selection'},{'name': 'OntologyTreeComponent', 'selector': 'ccf-ontology-tree'},{'name': 'OpacitySliderComponent', 'selector': 'ccf-opacity-slider'},{'name': 'OrganSelectorComponent', 'selector': 'ccf-organ-selector'},{'name': 'ResultsBrowserComponent', 'selector': 'ccf-results-browser'},{'name': 'ResultsBrowserItemComponent', 'selector': 'ccf-results-browser-item'},{'name': 'ReviewButtonComponent', 'selector': 'ccf-review-button'},{'name': 'ReviewModalComponent', 'selector': 'ccf-review-modal'},{'name': 'RightSidebarComponent', 'selector': 'ccf-right-sidebar'},{'name': 'RotationSliderComponent', 'selector': 'ccf-rotation-slider'},{'name': 'SchemeDropdownComponent', 'selector': 'ccf-scheme-dropdown'},{'name': 'SlicesInputComponent', 'selector': 'ccf-slices-input'},{'name': 'SpinnerOverlayComponent', 'selector': 'ccf-spinner-overlay'},{'name': 'StageNavComponent', 'selector': 'ccf-stage-nav'},{'name': 'StoreDebugComponent', 'selector': 'ccf-store-debug'},{'name': 'TagListComponent', 'selector': 'ccf-tag-list'},{'name': 'TagSearchComponent', 'selector': 'ccf-tag-search'},{'name': 'TextSearchComponent', 'selector': 'ccf-text-search'},{'name': 'ToggleButtonComponent', 'selector': 'ccf-drawer-toggle-button'},{'name': 'ToggleButtonComponent', 'selector': 'ccf-drawer-toggle-button'},{'name': 'VideoModalComponent', 'selector': 'ccf-video-modal'},{'name': 'VideoModalLauncherComponent', 'selector': 'ccf-video-modal-launcher'},{'name': 'ViewerComponent', 'selector': 'ccf-viewer'},{'name': 'VisibilityMenuComponent', 'selector': 'ccf-visibility-menu'},{'name': 'VisibilityToggleComponent', 'selector': 'ccf-visibility-toggle'}];
     var DIRECTIVES = [{'name': 'NumberDirective', 'selector': 'input[ccfNumbersOnly]'}];
     var ACTUAL_COMPONENT = {'name': 'BlockSizeInputComponent'};

diff --git a/docs/components/ContentComponent-2.html b/docs/components/ContentComponent-2.html
@@ -956,7 +956,8 @@ <h3 id="inputs">
                     <code>./content.component.scss</code>
                 </p>
                 <pre class="line-numbers"><code class="language-scss">:host {
-  display: block;
+  display: flex;
+  flex-direction: column;
   height: 100%;
   z-index: 2;
   overflow: auto;