microbiome_multiomics_analysis_workflow

A Multi-Omics Microbiome Analysis Workflow

There repository contains all scripts for paper Restructuring the Gut Microbiota by Intermittent Fasting Lowers Blood Pressure.

This repository includes 16s and WGS analysis for microbiome, non-targeted metabolomics, and multi-omics integration.

Used packages/tools:

• python: Numpy, scipy, seaborn, pandas, statsmodels, matplotlib, and scikit-learn
• R: vegan, DADA2, biomformat,ComplexHeatmap, circlize, ggplot2, RColorBrewer, car, mixOmics, and WRS2.
• Commandline tools: biobakery_workflow, HUMAnN3, MetaPhlAn3, biom-format
• Others: LEfSe, GraphPad Prism 9