Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

WIP: QC improvements #381

Closed
wants to merge 2 commits into from
Closed

WIP: QC improvements #381

wants to merge 2 commits into from

Conversation

armish
Copy link
Member

@armish armish commented Nov 14, 2016

This PR will provide additional QC functionalities via:

  • MultiQC (for unification of the reports)
  • QualiMap (for simple coverage stats)
  • Samtools stats (in addition to current flagstats)
  • Cloml (for purity estimation from VCFs)

@armish armish added the WIP label Nov 14, 2016
@hammer
Copy link
Member

hammer commented Dec 17, 2016

@armish is this PR blocking on anything?

@armish
Copy link
Member Author

armish commented Dec 30, 2016

@hammer: nope — it is just that I wasn't able to get to this due to other things taking priority over these improvements.

@ihodes
Copy link
Member

ihodes commented Jan 31, 2017

If you're thinking of adding more… :) #408

@armish
Copy link
Member Author

armish commented Feb 7, 2017

@tavinathanson: Thanks for mentioning RNA-seqc, I will definitely give that a try and add it to the list if the reports look promising.

@armish
Copy link
Member Author

armish commented May 22, 2017

I am going to close this one down and continue the work over the condafication front (#468) since that will be making things much easier for us.

@armish armish closed this May 22, 2017
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
Projects
None yet
Development

Successfully merging this pull request may close these issues.

3 participants