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66 Open 106 Closed
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Issues list

GT:CN ./.:309.986
#332 opened Jul 24, 2024 by pingxinxing
[E::vcf_parse_format] Incorrect number of FORMAT fields at chrxxxx
#331 opened Jun 16, 2024 by pingxinxing
vcftobedpe does not give strandedness for MANTA Outputs
#330 opened Jun 12, 2024 by think-o
1
svtools copynumber:Can't find directory 'bin_1000'.
#329 opened Jun 3, 2024 by pingxinxing
svtools lsort KeyError: 'CIPOS'
#328 opened Apr 12, 2024 by hcsun1
Assistance Needed with svtools lsort - No Output Generated
#327 opened Dec 15, 2023 by karen916
svtools afreq KeyError: 'SQ' in
#326 opened Jun 19, 2023 by shameem356
ValueError: max() arg is an empty sequence
#325 opened Apr 10, 2023 by Hubuyan
bedpetovcf does not work with vcftobedpe output as input
#324 opened Jun 3, 2022 by anoronh4
1
svtools copynumber error *** Break *** segmentation violation
#323 opened May 25, 2022 by cusanchang
Not able to convert vcf to bedpe (Manta output)
#322 opened May 17, 2022 by Giuseppe1995
possible bug in TRA conversion
#318 opened Jan 26, 2022 by anoronh4
Are lmerge same as l_merge.py scripts included in LUMPY?
#317 opened Nov 15, 2021 by sulinq
lsort Index error
#316 opened Nov 2, 2021 by stubbsrl
3
lmerge divide zero error
#315 opened Oct 15, 2021 by genostack
2
Installation still fails due to conflicting pandas version
#314 opened Oct 14, 2021 by Carina201000
what is the difference between lmerge sum and prod algorithm ?
#313 opened Oct 14, 2021 by genostack
pip install fails
#312 opened Aug 10, 2021 by anoronh4
2
svtools vcfpaste error
#310 opened Apr 19, 2021 by KrithikaSubramanian
2
No module named 'l_bp'
#309 opened Apr 16, 2021 by Avramis
1
Python 3.6
#308 opened Dec 21, 2020 by mike-molnar
vcftobedpe complains about no END field in LUMPY BNDs.
#307 opened Oct 26, 2020 by jasonbhn
1
Genotyping skips insertions (INS)
#306 opened Oct 22, 2020 by hellebaa
Does svtools support to mapping BEDPE to human genes?
#305 opened Sep 16, 2020 by Shicheng-Guo
Syntax error msg
#304 opened Sep 15, 2020 by nitha26
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