Universebenzene's personal Gentoo overlay.
Including some old software that no longer supported by official portage.
Alternative building of astropy related packages (more improvement for the doc building and testing, though some of them only work when the network-sandbox FEATURE is diabled. See the USE descriptions for details. (more information))
Related overlay: benzene-testlay, with some packages testing. You can add it for interest.
This overlay is available on Gentoo repositories. You can add it simply through several tools (e.g.: layman -a benzene-overlay or eselect repository enable benzene-overlay).
It's recommended to mask the whole overlay and then unmask just the packages you need, in order not to get mixed up with other overlays with same packages. (e.g. for using wps-office: echo "*/*::benzene-overlay" > /etc/portage/package.mask/benzene-overlay; echo "app-office/wps-office::benzene-overlay" >> /etc/portage/package.unmask/benzene-overlay)
Some science related miscellaneous python package are listed in a separate table below, in order to simplify the main table.
Doc/sphinx and Doc/MkDocs related packages are listed in separate tables here and here
| Package name | Available version | Additional information |
|---|---|---|
| app-editors/formiko | 1.5.0; (live) | |
| app-i18n/fcitx | 4.2.9.8-r1 | Slot 4 with modified icon name in order to be able to install along with fcitx:5. For more support for installing fcitx4 along with 5, try benzene-testlay. |
| app-i18n/fcitx-configtool | 0.4.10 | Slot 4 dropped by official portage |
| app-i18n/fcitx-qt5 | 1.2.5 | Dropped by official portage |
| app-i18n/fcitx-table-extra | 0.3.8-r1 | Slot 4 with modified icon name in order to be able to install along with fcitx:5. For more support for installing fcitx4 along with 5, try benzene-testlay. |
| app-i18n/fcitx-table-other | 0.2.4-r1 | Slot 4 with modified icon name in order to be able to install along with fcitx:5. For more support for installing fcitx4 along with 5, try benzene-testlay. |
| app-i18n/mozc | 2.28.5029.102-r4 | Include fcitx4 support that dropped by official portage |
| app-office/wps-office | 11.1.0.11711-r3; 11.1.0.11723 | Add CN version and more language support (encouraged by AUR). From 11.1.0.10702 you need to set locale outside to get multi-language support. Please focus on the output after merging the package. Dependency media-libs/freetype-wps:2 like AUR can be included without system-freetype USE flag to fix the bold font issue, which is provided by @123485k |
| app-pda/i4tools | 3.06.007 | 爱思助手 |
| app-text/{de,es,fr}helper | 12.7.1 | Converted from AUR （欧路德语/西语/法语助手） |
| app-text/eudic | 12.7.1 | Converted from AUR （欧路词典） |
| app-text/goldendict | 1.5.0; 22.12.02_p20230924104339; (live){,-r22} | Dropped by official portage. Fix the ebuild for pg_overlay. Version above 22 and 9999-r22 are forked versions from here which can use qtwebengine instead of qtwebkit |
| app-text/powerword | 1.2 | Encouraged by AUR （金山词霸） |
| app-text/ydcv | 0.7; (live) | Need other overlays (like guru or HomeAssistantRepository) if you enable pkg-info use. Some other issues here （有道词典命令行-python版） |
| app-text/ydcv-rs | 0.6.3; (live) | |
| app-text/ydgo | 0.6.3; (live) | Needs interactive inputing during merging process. PAY ATTENTION TO THE OUTPUT MESSAGES （有道词典命令行-go版） |
| app-text/youdao-dict | 6.0.0-r3 | Converted from AUR. In order to use this you must use the patched QtWebkit and PyQt5 with webkit USE flag in this overlay INSTEAD OF THE OFFICIAL ONE （有道词典） |
| app-vim/indentLine | 2.0; (live) | Live version is recommended |
| app-vim/vim-indent-guides | 1.6; (live) | |
| dev-cpp/gtkspellmm | 3.0.5 | Dependency for gimagereader[gtk] |
| dev-lang/gdl | 1.0.0_rc3-r3; 1.0.1-r3; 1.0.4-r1 | Allow gdl and the python module installed at the same time |
| dev-python/aioftp | 0.24.1 | |
| dev-python/corner | 2.2.2; 2.2.3 | |
| dev-python/dask | 2024.4.1; 2024.11.2 | Dropped by official portage |
| dev-python/dropbox | 12.0.2 | |
| dev-python/exifread | 3.0.0 | |
| dev-python/glfw | 2.8.0 | Dependency for glue-vispy-viewer>=1.2.0 |
| dev-python/glymur | 0.12.0; 0.12.9_p1; 0.12.9_p2; 0.13.2_p1; 0.13.6 | |
| dev-python/hsluv | 5.0.4 | |
| dev-python/memray | 1.10.0; 1.14.0 | BINARY WHEEL VERSIONS are used to avoid npm building |
| dev-python/nose | 1.3.7_p20221026-{r1,r2} | Dropped by official portage |
| dev-python/oldest-supported-numpy | 2023.12.21 | The numpy version limitations are changed from == into >=. If you have better solution, just bring issues or pull requests. |
| dev-python/parfive | 1.5.1; 2.1.0 | |
| dev-python/poetry-dynamic-versioning | 1.4.1 | Dependency dunamai also included but not listed in the table |
| dev-python/PyQt5 | 5.15.11 | Add webkit USE flag (dropped by official portage) to get youdao-dict in this overlay work |
| dev-python/pydantic-settngs | 2.6.1 | |
| dev-python/pytest-cython | 0.2.2; 0.3.1 | |
| dev-python/pytest-socket | 0.7.0 | |
| dev-python/api4jenkins | 2.0.3 | |
| dev-python/python-jenkins | 1.8.2; (live) | Dependency multi_key_dict is also included but not listed here |
| dev-python/vispy | 0.13.0; 0.14.3 | |
| dev-python/yt | 4.0.5; 4.1.4; 4.2.2; 4.3.0; 4.4.0 | Full doc building needs huge amount of data, so cannot complete locally. |
| dev-python/zarr | 2.18.4 | |
| dev-qt/qtwebkit | 5.212.0_pre20200309-{r1,r2} | Add patch to get youdao-dict in this overlay work (the -r2 is a test for upgrade EAPI to 8, and might be a little buggy with youdao-dict.) |
| dev-util/micromamba{,-bin} | 1.5.6 | dev-util/mamba[micromamba] in gentoo-zh is recommended if you want source version and don't care about testing. Also need gentoo-zh to provide dependency dev-cpp/reproc, dev-cpp/tl-expected and sys-libs/libsolv . |
| gnome-base/gconf | 3.2.6-r6 | Dropped by official portage but required by net-misc/oss-browser-bin. Copied from KBrown-pub and kzd overlays but fix dependency dev-util/gtk-doc-am → dev-build/gtk-doc-am |
| gui-apps/regreet | 0.1.1; (live) | Encouraged by guru but better naming and packaging. Needs enabling the guru overlay if you enable the cage flag. |
| media-fonts/wps-office-fonts | 1.0 | WPS Linux旧版自带方正系字体 |
| media-gfx/gpaint | 0.3.3 | With patches from Debian |
| media-gfx/fontweak | 1.3.1 | GUI for fontconfig |
| media-libs/gmtk | 1.0.9 | Dropped by official portage. Dependency of media-video/gnome-mplayer |
| media-video/bcwc_pcie | (live version) | Slightly edited from menelkir's overlay. If you have any problems about enabling kernel options, take a look at this. |
| media-video/facetimehd-firmware | (live version) | Converted from AUR. 9999 indicates the git repo of the downloading tool, not the real version of the firmware (1.43.0 right now). |
| media-video/gnome-mplayer | 1.0.9-r1 | Dropped by official portage |
| media-sound/ting-{de,en,es,fr}}-bin | 9.4.1 | 欧路每日德语/英语/西语/法语听力 |
| net-im/electron-qq-bin (masked) | 1.5.7; 2.1.4 | Already deprecated and renamed as Icalingua (also in this overlay) |
| net-fs/ossfs | 1.91.4 | 阿里云对象存储OSS Bucket挂载工具 |
| net-im/electron-wechat-bin | 1.0.0 | Newer project of Electron-built WeChat, a.k.a. Freechat |
| net-im/electronic-wechat-bin | 2.3.1; 2.3.2 (masked) | Version 2.3.2 is a fixed version by UOS header. However Tencent will limit your account if you use this version, so it's masked now. See here for more information. |
| net-im/icalingua++-bin | 2.7.7; 2.9.13; 2.12.23 | Previously called Electron QQ. A branch of previous deleted repo, with limited support. |
| net-im/wemeet | 2.8.0.3; 3.10.0.401; 3.19.1.401 | Encouraged by AUR （腾讯会议） |
| net-libs/libaxon-bin | 1.0.2 | Backend for Purple OICQ |
| net-misc/baidunetdisk | 3.0.1; 4.3.0; 4.17.7 | Converted from AUR and encouraged by fixing from @vowstar (Also in gentoo-zh overlay, while upgrade will be faster here) （百度网盘） |
| net-misc/baidupcs-go | 3.6.2; 3.8.1; 3.9.5_beta(template); 3.9.6; (live) | Also in gentoo-zh overlay, while upgrade will be faster here. Proxy may needed if you use the 9999 version, as the proxy.golang.org is banned in some regions |
| net-misc/baidupcs-go-bin | 3.6.2; 3.9.5_beta(template); 3.9.5 | |
| net-misc/landrop | 0.4.0; (live) | |
| net-misc/oss-browser-bin | 1.18.0 | Encouraged by AUR （阿里云对象存储OSS图形化管理工具） |
| net-misc/ossutil | 1.7.19; (live) | 阿里云对象存储OSS命令行工具 |
| net-misc/sunloginclient | 10.0.2.24779; 11.0.0.36662-r1; 15.2.0.63064 | Converted from AUR, but versions ABOVE 10.0.2.24779 may have some problem with OpenRC users (needs libsystemd). See here for details and solutions（向日葵远程控制） |
| net-misc/todesk | 4.1.0-r4; 4.3.1.0; 4.7.2.0 | Encouraged by AUR （ToDesk远程控制） |
| net-misc/xunlei-download | 1.0.0.5 | Converted from AUR （迅雷Linux） |
| net-news/quiterss | 0.19.4; (live) | Dropped by official portage along with qtwebkit |
| net-proxy/gg | 0.2.13; 0.2.19 | |
| net-proxy/v2raya-bin | 1.5.1698.1; 2.2.6.3 | Converted from AUR. Needs other overlays like gentoo-zh. From 2.2.1 only armv7 source is used for arm KEYWORD. If you need armv6 one, try editing the SRC_URI yourself. |
| sci-astronomy/aladin-bin | 12.060 | |
| sci-astronomy/astrometry | 0.78; 0.80; 0.85; 0.97 | Add USE for switching the netpbm support |
| sci-astronomy/healpix | 3.83_pre20240419 3.83 | sci-libs/libsharp needed for the cxx USE flag is also in this overlay but not listed in this table directly |
| sci-astronomy/topcat | 4.8; 4.9.1; 4.10.2 | |
| sys-block/diskus | 0.7.0; (live) | |
| sys-libs/libsystemd | 254.17; 254.21; 255.11; 255.15; 256.7; 256.9; 25y.1; (live) | A standalone package to provide libsystemd.so for packages depend on the lib on non-systemd system. Still on trial. IF YOU HAVE ANY IDEA TO IMPROVE THIS PACKAGE JUST BRING ISSUES OR PULL REQUESTS. |
| sys-libs/elogind-libsystemd | 0 | An alternative way to provide standalone libsystemd.so by just linking libelogind.so. Does not support multilib yet due to elogind itself. |
| www-plugins/adobe-flash | 32.0.0.465 | Dropped by official portage |
| x11-libs/lain | (live version) | 9999 for old ebuild without lua targets support (masked); 9999-r100 with the new lua-single eclass |
| x11-plugins/purple-oicq | 1.0.2; (live) | OICQ plugin (Tencent QQ support) for Pidgin/libpurple. |
| virtual/libsystemd | 0 | A virtual package for choosing libsystemd.so packages |
Information for some of the astropy related packages are listed here.
Packages in this table might just be pulled in as dependencies by some sciense related python packages.
| Package name | Available version | Additional information |
|---|---|---|
| dev-python/adal | 1.2.7 | SunPy, h5pyd related |
| dev-python/abg-python | 1.1.5 | Optional for yt |
| dev-python/aggdraw | 1.3.16; 1.3.19 | Optional for ginga |
| dev-python/aiobotocore | 2.15.2 | Pulled in by s3fs |
| dev-python/aiohttp-retry | 2.9.1 | Optional for new ratarmount{,core} <- ipfsspec |
| dev-python/arviz | 0.17.1; 0.20.0 | Optional for corner.py. |
| dev-python/asciitree | 0.3.3 | Pulled in by zarr |
| dev-python/azure-core | 1.26.3; 1.32.0 | Required by new msrest |
| dev-python/bidict | 0.22.0; 0.23.1 | Optional for yt |
| dev-python/bsddb3 | 6.2.9-r1 | Dropped by official portage. Test dependency for zarr |
| dev-python/check-manifest | 0.49; 0.50 | Dropped by official portage. Build dependency for xarray-datatree |
| dev-python/cmdstanpy | 1.0.8; 1.2.5 | Test dependency for arviz. Dependency stanio is included but not listed in the table |
| dev-python/dag-cbor | 0.3.3 | Optional for new ratarmount{,core} <- ipfsspec |
| dev-python/distributed | 2024.4.1; 2024.11.2 | Optional for arviz and spectral-cube |
| dev-python/dm-tree{,-bin} | 0.1.8 | Required by new arviz |
| dev-python/dropboxdrivefs | 1.4.1 | Optional for new ratarmount{,core} |
| dev-python/eventlet | 0.33.3; 0.35.2 | Dropped by official portage. Required by firefly{,-viz} |
| dev-python/f90nml | 1.4.4 | Optional for yt |
| dev-python/fastcache | 1.1.0 | Optional for yt |
| dev-python/fast-zip-decryption | 3.0.0 | Optional for new ratarmount{,core} |
| dev-python/firefly-viz | 2.0.4 | Optional for yt |
| dev-python/firefly | 3.3.2 | Optional for new yt |
| dev-python/flask-socketio | 5.5.0 | Optional for yt |
| dev-python/fusepy | 3.0.1 | Optional for yt |
| dev-python/heapdict | 1.0.1 | Pulled in by zict and distributed |
| dev-python/indexed-{bzip2,zstd} | 1.6.0 / 1.6.1 | Optional for yt (ratarmount{,core}) |
| dev-python/ipfsspec | 0.5.3 | Optional for new ratarmount{,core} |
| dev-python/isal | 1.7.1 | Optional for new ratarmount{,core} |
| dev-python/rapidgzip | 0.14.3 | Optional for new ratarmount{,core} |
| dev-python/libconf | 2.0.1 | Optional for yt |
| dev-python/memory-profiler | 0.61 | Dropped by official portage. Test dependency for ccdproc |
| dev-python/miniballcpp | 0.2.3 | Optional for yt |
| dev-python/msrest | 0.7.1 | SunPy, h5pyd related |
| dev-python/msrestazure | 0.6.4 | SunPy, h5pyd related |
| dev-python/multiformats | 0.3.1_p4 | Optional for new ratarmount{,core} <- ipfsspec. Dependencies like bases(base58) and multiformats-config are not included in this table. For more functions with pycryptodomex you need to add parona-overlay |
| dev-python/numcodecs | 0.12.1; 0.13.1 | Pulled in by zarr |
| dev-python/pyfatfs | 1.1.0 | Optional for new ratarmount{,core} |
| dev-python/pykdtree | 1.3.13 | Optional for yt |
| dev-python/pysquashfsimage | 0.9.0_p20240421181514 | Optional for new ratarmount{,core} |
| dev-python/pytest-examples | 0.0.15 | Test dependency for pydantic-settings |
| dev-python/pytest-textual-snapshot | 1.0.0 | Test dependency for new memray. Dependency syrupy is included but not listed in the table |
| dev-python/python-pkcs11 | 0.7.0-r1 | Test and optional dependency for asyncssh. Recover from GURU |
| dev-python/python-socketio | 5.9.0; 5.12.0 | Optional for yt |
| dev-python/python-xz | 0.5.0 | Optional for yt |
| dev-python/pure-protobuf | 2.3.0; 3.1.3 | Optional for new ratarmount{,core} <- ipfsspec |
| dev-python/rasterio | 1.3.8_p2; 1.4.3 | Optional for photutils. Dependencies are not all listed in the table |
| dev-python/ratarmount | 0.14.2; 0.15.2; 1.0.0 | Optional for yt. Dependency ratarmountcore is also included in this overlay but not listed in the table |
| dev-python/s3fs | 2024.10.0; 2024.12.0 | Test dependency for zarr and astropy>=5.2 |
| dev-python/siosocks | 0.3.0 | Optional for aioftp |
| dev-python/smbprotocol | 1.15.0 | Optional for new ratarmount{,core} |
| dev-python/sortedcollections | 2.1.0 | Test dependency for bidict>=0.23.0 |
| dev-python/sshfs | 2024.9.0 | Optional for new ratarmount{,core}. For running test, you need to forcely unmask paramiko[server], e.g. echo "dev-python/paramiko -server" >> /etc/portage/profile/package.use.mask" |
| dev-python/stone | 3.3.8 | Required by python dropbox |
| dev-python/textual | 1.0.0 | Pulled in by memray>=1.11. Dependency tree-sitter-languages is included but not listed in the table |
| dev-python/typing-validation | 1.2.11_p4 | Optional for new ratarmount{,core} <- ipfsspec |
| dev-python/colorspacious | 1.1.2 | Pulled in by cmyt. Dropped by official portage |
| dev-python/cmyt | 2.0.0; 2.0.1 | Pulled in by yt |
| dev-python/unyt | 2.9.5; 3.0.3 | Pulled in by yt |
| dev-python/webdav4 | 0.10.0 | Optional for new ratarmount{,core} |
| dev-python/wsgidav | 4.3.3 | Test dependency for webdav4 |
| dev-python/zict | 2.2.0; 3.0.0 | Pulled in by distributed |
| Package name | Available version | Additional information |
|---|---|---|
| dev-python/sphinx | 5.1.1; 7.1.2 | 5 for old myst-parser and myst-nb; 7.1 for glue-qt doc |
| dev-python/ablog | 0.11.12 | |
| dev-python/jupyter-cache | 0.6.1; 1.0.1 | |
| dev-python/jupyter-sphinx | 0.5.3 | |
| dev-python/jupytext | 1.16.6 | Build with wheel source to include Jupyter Lab Extenstion |
| dev-python/myst-nb | 0.17.2; 1.1.2 | |
| dev-python/myst-parser | 0.18.1-r1 | Only for myst-nb that depends on old version |
| dev-python/runnotebook | 0.3.1; (live) | |
| dev-python/sphinx-astropy | 1.6.0; 1.9.1 | See here for more information. |
| dev-python/sphinx-asdf | 0.1.3; 0.1.4; 0.2.4 | |
| dev-python/sphinx-autobuild | 2021.3.14; 2024.4.16; 2024.10.3 | |
| dev-python/sphinx-autosummary-accessors | 2023.4.0 | |
| dev-python/sphinx-book-theme | 0.2.0; 1.0.1; 1.1.3 | network-sandbox FEATURE will be disabled if you enable doc flag for newest version. |
| dev-python/sphinx-changelog | 1.6.0 | |
| dev-python/sphinx-click | 6.0.0 | |
| dev-python/sphinx-codeautolink | 0.15.2 | |
| dev-python/sphinx-design | 0.6.1 | |
| dev-python/sphinx-examples | 0.0.5 | |
| dev-python/sphinx-hoverxref | 1.5.0 | |
| dev-python/sphinx-readable-theme | 1.3.0 | |
| dev-python/sphinx-thebe | 0.2.1; 0.3.1 | |
| dev-python/sphinx-togglebutton | 0.3.2 | |
| dev-python/sphinx-contributors | 0.2.7 | |
| dev-python/sphinx-mdinclude | 0.6.2 | |
| dev-python/sphinxcontrib-globalsubs | 0.1.2 | |
| dev-python/sphinxcontrib-srclink | 0.2.4 | |
| dev-python/sphinxcontrib-youtube | 1.2.0; 1.4.1 | network-sandbox FEATURE will be disabled if you enable demo videos for doc building in version 1.2.0. |
| dev-python/sphinxext-opengraph | 0.9.1 | |
| dev-python/dask-sphinx-theme | 3.0.6 | |
| dev-python/sunpy-sphinx-theme | 1.2.42; 2.0.2; 2.0.18 | |
| dev-python/pydata-sphinx-theme | 0.13.3-r1 | Old version dropped by official portage, required by sunpy-sphinx-theme |
| dev-python/mistune | 0.8.4-r1; 2.0.5 | For sphinx-asdf and sphinx-mdinclude that depend on old version |
| dev-python/nbconvert | 6.4.5 | Depends on old mistune |
| Package name | Available version | Additional information |
|---|---|---|
| dev-python/docstring-parser | 0.16 | Optional dependency of pytkdocs |
| dev-python/markdown-callouts | 0.3.0; 0.4.0 | mkdocstrings related (should be test depend) |
| dev-python/mkdocs-coverage | 1.0.0 | mkdocstrings related (should be test depend) |
| dev-python/mkdocs-git-committers-plugin | 2.4.1 | mkdocstrings related (should be test depend) |
| dev-python/mkdocs-jupyter | 0.25.1 | |
| dev-python/mkdocs-literate-nav | 0.6.1 | mkdocstrings related (should be test depend) |
| dev-python/mkdocs-section-index | 0.3.9 | mkdocstrings related (should be test depend) |
| dev-python/mkdocstrings-crystal | 0.3.5; 0.3.7 | |
| dev-python/mkdocstrings-python-legacy | 0.2.4 | |
| dev-python/pytkdocs | 0.16.2 | Dependency of mkdocstrings-python-legacy |