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genenotebook: give a few more seconds to startup #91

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merged 3 commits into from
Feb 1, 2024
Merged

genenotebook: give a few more seconds to startup #91

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72331c3
give a few more seconds to startup
abretaud Nov 20, 2023
04881c4
rework daemon waiting
abretaud Feb 1, 2024
aa1fd65
update gnb
abretaud Feb 1, 2024
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46 changes: 31 additions & 15 deletions tools/genenotebook/launch_gnb.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -2,17 +2,26 @@

set -e

mongod --dbpath ./mongo_db/ --unixSocketPrefix `pwd` --bind_ip fake_socket --logpath ./mongod.log --pidfilepath ./mongo.pid &
echo "Running mongod: "
mongod --dbpath ./mongo_db/ --unixSocketPrefix "$(pwd)" --bind_ip fake_socket --logpath ./mongod.log --pidfilepath ./mongo.pid &

sleep 8
echo "Waiting while mongod starts up"

tries=0

# "Listening on" is for mongodb 5x
if ! grep -q "Listening on" ./mongod.log; then
echo "Failed to launch MongoDB:" 1>&2;
cat ./mongod.log 1>&2;
kill $GNB_PID;
exit 1;
fi;
while ! grep -q "Listening on" ./mongod.log; do

tries=$((tries + 1))

if [ "$tries" -ge 30 ]; then
echo "Failed to launch MongoDB:" 1>&2;
cat ./mongod.log 1>&2;
exit 1;
fi

sleep 3
done;

TMP_STORAGE=$(pwd)/tmp_storage
mkdir "$TMP_STORAGE"
Expand All @@ -23,11 +32,18 @@ genoboo run --storage-path "$TMP_STORAGE" --port ${GNB_PORT} --mongo-url mongodb

export GNB_PID=$!

sleep 15
tries_gnb=0

while ! grep -q "GeneNoteBook server started, serving" ./gnb.log; do

tries_gnb=$((tries_gnb + 1))

if [ "$tries_gnb" -ge 30 ]; then
echo "Failed to launch GeneNoteBook:" 1>&2;
cat ./gnb.log 1>&2;
kill $GNB_PID $(<"./mongo.pid");
exit 1;
fi

if ! grep -q "GeneNoteBook server started, serving" ./gnb.log; then
echo "Failed to launch GeneNoteBook:" 1>&2;
cat ./gnb.log 1>&2;
kill $GNB_PID $(<"./mongo.pid");
exit 1;
fi;
sleep 3
done;
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