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@ga4gh

Global Alliance for Genomics and Health

An international coalition, formed to enable the sharing of genomic and clinical data.

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  1. ga4gh-schemas ga4gh-schemas Public archive

    Models and APIs for Genomic data. RETIRED 2018-01-24

    Python 214 114

  2. benchmarking-tools benchmarking-tools Public

    Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls

    HTML 183 47

  3. ga4gh-server ga4gh-server Public archive

    Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24

    Python 96 93

  4. workflow-execution-service-schemas workflow-execution-service-schemas Public

    The WES API is a standard way to run and manage portable workflows.

    82 38

  5. task-execution-schemas task-execution-schemas Public

    80 27

  6. vrs vrs Public

    Extensible specification for representing and uniquely identifying biological sequence variation

    Jupyter Notebook 78 32

Repositories

Showing 10 of 124 repositories
  • gk-pilot Public

    A pilot implementation of GKS Work Stream specifications.

    ga4gh/gk-pilot’s past year of commit activity
    Makefile 0 Apache-2.0 1 13 7 Updated Jul 6, 2024
  • va-spec Public

    An information model for representing variant annotations.

    ga4gh/va-spec’s past year of commit activity
    Jupyter Notebook 14 2 100 (2 issues need help) 6 Updated Jul 5, 2024
  • vrs-python Public

    GA4GH Variation Representation Python Implementation

    ga4gh/vrs-python’s past year of commit activity
    Python 46 Apache-2.0 26 45 (2 issues need help) 2 Updated Jul 5, 2024
  • gks-common Public

    Common classes and schemas used by all GKS specifications (ie. VR, VA, etc..)

    ga4gh/gks-common’s past year of commit activity
    Makefile 2 Apache-2.0 0 6 3 Updated Jul 4, 2024
  • quality-control-wgs Public

    Home for the GA4GH Quality Control of Whole Genome Sequencing metrics and reference implementations

    ga4gh/quality-control-wgs’s past year of commit activity
    Jupyter Notebook 7 Apache-2.0 3 7 4 Updated Jul 4, 2024
  • vrs Public

    Extensible specification for representing and uniquely identifying biological sequence variation

    ga4gh/vrs’s past year of commit activity
    Jupyter Notebook 78 Apache-2.0 32 37 3 Updated Jul 4, 2024
  • drs-compliance-suite Public

    Tests to verify the compliance of a DRS implementation with GA4GH DRS specification

    ga4gh/drs-compliance-suite’s past year of commit activity
    Python 0 Apache-2.0 1 8 5 Updated Jul 3, 2024
  • pedigree-tools Public
    ga4gh/pedigree-tools’s past year of commit activity
    JavaScript 1 0 2 3 Updated Jul 3, 2024
  • cat-vrs Public

    A terminology and data model for describing categorical variation concepts.

    ga4gh/cat-vrs’s past year of commit activity
    Python 0 Apache-2.0 2 5 0 Updated Jul 3, 2024
  • gks-ashg-2024-hackathon Public
    ga4gh/gks-ashg-2024-hackathon’s past year of commit activity
    0 MIT 0 0 0 Updated Jul 2, 2024
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