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sansa-0.2.2
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fd00 committed Oct 2, 2024
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34 changes: 19 additions & 15 deletions sansa/README
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Expand Up @@ -3,42 +3,44 @@ sansa
Structural variant annotation

Runtime requirements:
cygwin-3.1.7-1
cygwin-3.6.0-0.203.gf78009cb1ccf
libboost_date_time1.66-1.66.0-1
libboost_filesystem1.66-1.66.0-1
libboost_iostreams1.66-1.66.0-1
libboost_program_options1.66-1.66.0-1
libboost_system1.66-1.66.0-1
libgcc1-10.2.0-1
libhts3-1.11.0-1bl1
libstdc++6-10.2.0-1
libgcc1-12.4.0-3
libhts3-1.21-1bl1
libstdc++6-12.4.0-3

Build requirements:
(besides corresponding -devel packages)
binutils-2.34+1git.de9c1b7cfe-1
cygport-0.34.0-1
gcc-core-10.2.0-1
gcc-g++-10.2.0-1
make-4.3-1
binutils-2.43.1-1
cygport-0.36.9-1
gcc-core-12.4.0-3
gcc-g++-12.4.0-3
libboost-devel-1.66.0-1
libhts-devel-1.21-1bl1
make-4.4.1-2

Canonical website:
https://github.com/dellytools/sansa

Canonical download:
https://github.com/dellytools/sansa/archive/v0.0.7.tar.gz
https://github.com/dellytools/sansa/archive/refs/tags/v0.2.2.tar.gz

-------------------------------------------

Build instructions:
1. unpack sansa-0.0.7-X-src.tar.xz
1. unpack sansa-0.2.2-X-src.tar.xz
2. if you use setup to install this src package,
it will be unpacked under /usr/src automatically
% cd /usr/src
% cygport ./sansa-0.0.7-X.cygport all
% cygport ./sansa-0.2.2-X.cygport all

This will create:
/usr/src/sansa-0.0.7-X-src.tar.xz
/usr/src/sansa-0.0.7-X.tar.xz
/usr/src/sansa-0.2.2-X-src.tar.xz
/usr/src/sansa-0.2.2-X.tar.xz

-------------------------------------------

Expand All @@ -47,13 +49,15 @@ Files included in the binary package:
(sansa)
/usr/bin/sansa.exe
/usr/share/doc/Cygwin/sansa.README
/usr/share/doc/sansa/AUTHORS
/usr/share/doc/sansa/LICENSE
/usr/share/doc/sansa/README.md

------------------

Port Notes:

----- version 0.2.2-1bl1 -----
Version bump.

----- version 0.0.7-1bl1 -----
Initial release by fd0 <https://github.com/fd00/>
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HOMEPAGE="https://github.com/dellytools/${PN}"
SRC_URI="https://github.com/dellytools/${PN}/archive/v${PV}.tar.gz"
SRC_URI="https://github.com/dellytools/${PN}/archive/refs/tags/v${PV}.tar.gz"

CATEGORY="Science"
SUMMARY="Structural variant annotation"
DESCRIPTION="${SUMMARY}"

LICENSE="BSD-3-Clause"
LICENSE_SPDX="SPDX-License-Identifier: BSD-3-Clause"
LICENSE_URI="LICENSE"

BUILD_REQUIRES="libboost-devel libhts-devel"

src_compile()
{
cd ${B}
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