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Ersilia Compound Embeddings

Bioactivity-aware chemical embeddings for small molecules. Using transfer learning, we have created a fast network that produces embeddings of 1024 features condensing physicochemical as well as bioactivity information The training of the network has been done using the FS-Mol and ChEMBL datasets, and Grover, Mordred and ECFP descriptors

Identifiers

  • EOS model ID: eos2gw4
  • Slug: eosce

Characteristics

  • Input: Compound
  • Input Shape: Single
  • Task: Representation
  • Output: Descriptor
  • Output Type: Float
  • Output Shape: List
  • Interpretation: Embedding of 1024 features representing a compound

References

Ersilia model URLs

Citation

If you use this model, please cite the original authors of the model and the Ersilia Model Hub.

License

This package is licensed under a GPL-3.0 license. The model contained within this package is licensed under a GPL-3.0 license.

Notice: Ersilia grants access to these models 'as is' provided by the original authors, please refer to the original code repository and/or publication if you use the model in your research.

About Us

The Ersilia Open Source Initiative is a Non Profit Organization (1192266) with the mission is to equip labs, universities and clinics in LMIC with AI/ML tools for infectious disease research.

Help us achieve our mission!

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