Build slims #215
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| name: Build slims | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| paths: | |
| - 'config/*' | |
| push: | |
| paths: | |
| - 'config.yaml' | |
| - '.github/workflows/build.yml' | |
| - './config/*' | |
| schedule: | |
| - cron: 1 0 1 1-12 * | |
| jobs: | |
| setup: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Install yq | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y jq | |
| sudo wget https://github.com/mikefarah/yq/releases/latest/download/yq_linux_amd64 -O /usr/bin/yq | |
| sudo chmod +x /usr/bin/yq | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| with: | |
| token: ${{ secrets.PAT }} | |
| - name: Add slimmer and robot URLs to environment | |
| run: | | |
| config_file="config.yaml" | |
| robot_jar=$(yq '.robot."robot-jar"' $config_file) | |
| robot_wrapper=$(yq '.robot."robot-wrapper"' $config_file) | |
| slimmer=$(yq '.slimmer' $config_file) | |
| echo "slimmer=$slimmer" >> $GITHUB_ENV | |
| echo "robot=$robot_wrapper" >> $GITHUB_ENV | |
| echo "robot_jar=$robot_jar" >> $GITHUB_ENV | |
| - name: Get slimmer and robot | |
| run: | | |
| wget ${{ env.slimmer }} | |
| wget ${{ env.robot }} | |
| wget ${{ env.robot_jar }} | |
| - name: Authorize running slim scripts | |
| run: chmod 755 src/build-workflow/*.sh | |
| slim: | |
| needs: setup | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| ontology: [aopo, bao, bfo, bto, ccont, cheminf, chebi, chmo, clo, efo, envo, fabio, go, iao, ncit, npo, oae, obcs, obi, pato, ro, sio, uberon, uo, msio] | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| - name: Run slim script for ${{ matrix.ontology }} | |
| run: bash src/build-workflow/slim.sh ${{ matrix.ontology }} | |
| - name: Check if file has changed | |
| id: file_changed | |
| run: | | |
| file="external-dev/${{ matrix.ontology }}-ext.owl" | |
| if git diff --quiet HEAD -- $file; then | |
| echo "changed=false" >> $GITHUB_ENV | |
| else | |
| echo "changed=true" >> $GITHUB_ENV | |
| fi | |
| - name: Upload slim artifact if changed | |
| if: env.changed == 'true' | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: ${{ matrix.ontology }}-ext.owl | |
| path: external-dev/${{ matrix.ontology }}-ext.owl | |
| commit: | |
| needs: slim | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| - name: Create temporary directory for artifacts | |
| run: mkdir -p temp-artifacts | |
| - name: Download all slim artifacts | |
| uses: actions/download-artifact@v3 | |
| with: | |
| path: temp-artifacts | |
| - name: Move downloaded artifacts to external-dev | |
| run: | | |
| ls temp-artifacts | |
| for file in temp-artifacts/*-ext.owl; do | |
| mv "$file" external-dev/ | |
| echo "Moved: $file" | |
| done | |
| rm temp-artifacts/* | |
| - name: Commit changed OWL files | |
| run: | | |
| git config --local user.email "[email protected]" | |
| git config --local user.name "Slimmer bot" | |
| git add -f external-dev/*.owl | |
| git commit -m "Actions - slim updated" || echo "No changes to commit." | |
| git push || echo "Push failed." |