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ekorpela authored Sep 13, 2024
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Expand Up @@ -63,26 +63,26 @@ Below you can find a list of course instances collected by the recent training s
|Course name |Url |Course year |Duration |Single cell omics technologies |Spatial omics technologies |
|:--------------------------------------------------------------------------------------------------------------------------|:-----|:--------------------------------|:--------|:-------------------------------------------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------|
|Single-cell RNA-seq data analysis using Chipster |[Link](https://chipster.2.rahtiapp.fi/manual/courses.html#single-cell)|2024 |2 days |scRNAseq | |
|Visium data analysis with Chipster |[Link](https://chipster.2.rahtiapp.fi/manual/courses.html#visium)|2022 |1 day | |Spot based SRT e g 10X Visium |
|Visium data analysis with Chipster |[Link](https://chipster.2.rahtiapp.fi/manual/courses.html#visium)|2022 |1 day | |Spot based SRT e.g. 10X Visium |
|MOOC Single-cell RNA-seq data analysis with Chipster |[Link](https://e-learn.csc.fi/course/view.php?id=17)|2024 |3 days |scRNAseq | |
|Single-cell RNA-seq with R |[Link](https://version.helsinki.fi/csc-courses/scrnaseq-with-r-2023/-/blob/main/README.md)|2023 |1 day |scRNAseq | |
|SincellTE: Single-Cell : Transcriptomics, Spatial and Multi-Omics |[Link](https://www.france-bioinformatique.fr/formation/single-cell-2022/)|2022 |5 days |scRNAseq, scATACseq, Multi modal Omics |Spot based SRT e g 10X Visium |
|SincellTE: Single-Cell : Transcriptomics, Spatial and Multi-Omics |[Link](https://www.france-bioinformatique.fr/formation/single-cell-2022/)|2022 |5 days |scRNAseq, scATACseq, Multi modal Omics |Spot based SRT e.g. 10X Visium |
|Single Cell Galaxy Training |[Link](https://training.galaxyproject.org/training-material/topics/single-cell/)|2021, 2023 | |scRNAseq, scATACseq | |
|Whole transcriptome data analysis |[Link](https://www.embl.org/about/info/course-and-conference-office/events/dat23-01/)|2023 |5 days |scRNAseq |Spot based SRT e g 10X Visium |
|Análisis de datos transcriptómicos de célula única (scRNA-seq) con R y Bioconductor |[Link](https://comunidadbioinfo.github.io/cdsb2021_scRNAseq/)|2021 |5 days |scRNAseq |Spot based SRT e g 10X Visium |
|Whole transcriptome data analysis |[Link](https://www.embl.org/about/info/course-and-conference-office/events/dat23-01/)|2023 |5 days |scRNAseq |Spot based SRT e.g. 10X Visium |
|Análisis de datos transcriptómicos de célula única (scRNA-seq) con R y Bioconductor |[Link](https://comunidadbioinfo.github.io/cdsb2021_scRNAseq/)|2021 |5 days |scRNAseq |Spot based SRT e.g. 10X Visium |
|Human Cell Atlas Latin America Single Cell RNA-seq Data Analysis Workshop |[Link](https://www.humancellatlas.org/hca-latin-america-2021-workshop/)|2021 |5 days |scRNAseq | |
|Single cell RNA-seq data analysis with R |[Link](https://nbisweden.github.io/excelerate-scRNAseq/)|2019 |2 days |scRNAseq | |
|Introduction to scRNAseq data analysis |[Link](https://github.com/scgenomics/scgenomics-public.github.io (in house course))| |5 days |scRNAseq | |
|MGC/BioSB Course - Single Cell Analysis |[Link](https://github.com/LeidenCBC/MGC-BioSB-SingleCellAnalysis2022)|2022 |5 days |scRNAseq, Multi modal Omics |Spot based SRT e g 10X Visium |
|MGC/BioSB Course - Single Cell Analysis |[Link](https://github.com/LeidenCBC/MGC-BioSB-SingleCellAnalysis2022)|2022 |5 days |scRNAseq, Multi modal Omics |Spot based SRT e.g. 10X Visium |
|Analysis of single cell RNA-seq data |[Link](https://www.singlecellcourse.org/)|Always online, last updated 2022 | |scRNAseq | |
|Workshop: Single-Cell RNA-Seq Analysis W20: Single-Cell RNA-Seq Analysis with R (note that there is also W20 with Python) |[Link](https://www.youtube.com/watch?v=jwSPTgF9ESQ&list=PLOXLw2he7kYpqAL0Gzco5NkA2DpewtluK)|2021 |1 day |scRNAseq | |
|Big-data and single-cell analysis for cancer research |[Link](https://stratagem-cost.eu/pandora-core-e-learning-platform-on-mdr-tumours/)|2023 |1 day |scRNAseq, CyTOF FACS, Multi modal Omics | |
|Single cell RNA-seq analysis workshop |[Link](https://github.com/NBISweden/workshop-scRNAseq)|2023 |5 days |scRNAseq, CITEseq | |
|Spatial Omics Data Analysis |[Link](https://github.com/NBISweden/workshop-spatial)|2023 |5 days |scRNAseq |Spot based SRT e g 10X Visium , Image based SRT e g 10X Xenium ISS , Targeted proteomics SRT e g CODEX , Image analysis SRT e g HE staining |
|Spatial Omics Data Analysis |[Link](https://github.com/NBISweden/workshop-spatial)|2023 |5 days |scRNAseq |Spot based SRT e.g. 10X Visium, Image based SRT e.g. 10X Xenium ISS, Targeted proteomics SRT e.g. CODEX, Image analysis SRT e.g HE staining |
|Epigenomics Workshop |[Link](https://nbis-workshop-epigenomics.readthedocs.io/en/latest/content/schedule.html)|2023 |5 days |scATACseq, scCHIPseq, scMETseq | |
|Advanced topics in Single Cell Omics |[Link](https://nbisweden.github.io/single-cell_sib_scilifelab_2021/README.html)|2021 |5 days |scRNAseq, Multi modal Omics |Spot based SRT e g 10X Visium |
|Joint SIB and NBIS/SciLifeLab Autumn School Single Cell Analysis Course |[Link](https://nbisweden.github.io/single-cell_sib_scilifelab/)|2019 |5 days |scRNAseq, CITEseq, CyTOF FACS, Multi modal Omics |Spot based SRT e g 10X Visium |
|Advanced topics in single-cell analysis |[Link](https://www.sib.swiss/training/course/20220426_ADVSC)|2022 |4 days |scRNAseq, Multi modal Omics |Spot based SRT e g 10X Visium |
|Advanced topics in Single Cell Omics |[Link](https://nbisweden.github.io/single-cell_sib_scilifelab_2021/README.html)|2021 |5 days |scRNAseq, Multi modal Omics |Spot based SRT e.g. 10X Visium |
|Joint SIB and NBIS/SciLifeLab Autumn School Single Cell Analysis Course |[Link](https://nbisweden.github.io/single-cell_sib_scilifelab/)|2019 |5 days |scRNAseq, CITEseq, CyTOF FACS, Multi modal Omics |Spot based SRT e.g. 10X Visium |
|Advanced topics in single-cell analysis |[Link](https://www.sib.swiss/training/course/20220426_ADVSC)|2022 |4 days |scRNAseq, Multi modal Omics |Spot based SRT e.g. 10X Visium |
|Single Cell Transcriptomics |[Link](https://sib-swiss.github.io/single-cell-training)|2023 |3 days |scRNAseq, CITEseq, Multi modal Omics | |
|Introduction to single-cell RNA-seq data analysis |[Link](https://bioinformatics-core-shared-training.github.io/SingleCell_RNASeq_May23/)|2023 |3 days |scRNAseq | |
|10X Single Cell RNA-Seq Analysis |[Link](https://www.bioinformatics.babraham.ac.uk/training.html#10xrna)|2023 |1 day |scRNAseq | |
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