Updates after 6 month review of Swedish page (#241)

* Sweden 6mo update * minor adjustments * finalise pathogens data description * Update PR following comments * reset data description
elixir-europe · Nov 9, 2023 · 645498f · 645498f
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diff --git a/_data/CONTRIBUTORS.yaml b/_data/CONTRIBUTORS.yaml
@@ -11,187 +11,192 @@
 #    image_url: absolute path to image (default image from github)
 
 Rudolf Wittner:
-    git: RudoWittner
-    email: [email protected]
-    orcid: 0000-0002-0003-2024
-    role: editor
-    affiliation: BBMRI-ERIC
+  git: RudoWittner
+  email: [email protected]
+  orcid: 0000-0002-0003-2024
+  role: editor
+  affiliation: BBMRI-ERIC
 Bert Droesbeke:
-    git: bedroesb
-    email: [email protected]
-    orcid: 0000-0003-0522-5674
-    role: editor
-    affiliation: VIB-UGent / ELIXIR-BE
+  git: bedroesb
+  email: [email protected]
+  orcid: 0000-0003-0522-5674
+  role: editor
+  affiliation: VIB-UGent / ELIXIR-BE
 Hedi Peterson:
-    git: hedi-ee
-    email: [email protected]
-    orcid: 0000-0001-9951-5116
-    role: editor
-    affiliation: UTARTU / ELIXIR-EE
+  git: hedi-ee
+  email: [email protected]
+  orcid: 0000-0001-9951-5116
+  role: editor
+  affiliation: UTARTU / ELIXIR-EE
 Stian Soiland-Reyes:
-    git: stain
-    email: [email protected]
-    orcid: 0000-0001-9842-9718
-    role: editor
-    affiliation: The University of Manchester / ELIXIR-UK
+  git: stain
+  email: [email protected]
+  orcid: 0000-0001-9842-9718
+  role: editor
+  affiliation: The University of Manchester / ELIXIR-UK
 Patricia Palagi:
-    git: ppalagi
-    email: [email protected]
-    orcid: 0000-0001-9062-6303
-    role: editor
-    affiliation: SIB Swiss Institute of Bioinformatics / ELIXIR-CH
+  git: ppalagi
+  email: [email protected]
+  orcid: 0000-0001-9062-6303
+  role: editor
+  affiliation: SIB Swiss Institute of Bioinformatics / ELIXIR-CH
 Liane Hughes:
-    git: LianeHughes
-    email: [email protected]
-    orcid: 0000-0002-4784-5436
-    role: editor
-    affiliation: SciLifeLab / Uppsala University
+  git: LianeHughes
+  email: [email protected]
+  orcid: 0000-0002-4784-5436
+  role: editor
+  affiliation: SciLifeLab / Uppsala University
 Eva Garcia Alvarez:
-    git: EvaGarciaAlvarez
-    email: [email protected]
-    orcid: 0000-0002-3522-5088
-    role: editor
-    affiliation: BBMRI-ERIC
+  git: EvaGarciaAlvarez
+  email: [email protected]
+  orcid: 0000-0002-3522-5088
+  role: editor
+  affiliation: BBMRI-ERIC
 Laura Portell Silva:
-    git: lauportell
-    email: [email protected]
-    orcid: 0000-0003-0390-3208
-    role: editor
-    affiliation: Barcelona Supercomputing Center / ELIXIR-ES
+  git: lauportell
+  email: [email protected]
+  orcid: 0000-0003-0390-3208
+  role: editor
+  affiliation: Barcelona Supercomputing Center / ELIXIR-ES
 Rafael Andrade Buono:
-    orcid: 0000-0002-6675-3836
-    git: rabuono
-    affiliation: VIB-UGent / ELIXIR-BE
-    role: editor
+  orcid: 0000-0002-6675-3836
+  git: rabuono
+  affiliation: VIB-UGent / ELIXIR-BE
+  role: editor
 Shona Cosgrove:
-    orcid: 0000-0003-3273-9013
-    git: ShonaCosgrove
-    email: [email protected]
-    affiliation: Sciensano
-    role: editor
+  orcid: 0000-0003-3273-9013
+  git: ShonaCosgrove
+  email: [email protected]
+  affiliation: Sciensano
+  role: editor
 Iris Van Dam:
-    orcid: 0000-0002-3965-6184
-    git: IrisVanDam
-    email: [email protected]
-    affiliation: Sciensano
-    role: editor
+  orcid: 0000-0002-3965-6184
+  git: IrisVanDam
+  email: [email protected]
+  affiliation: Sciensano
+  role: editor
 Katharina Lauer:
-    orcid: 0000-0002-4347-7525
-    git: klauer2207
-    email: [email protected]
-    affiliation: Airfinity Ltd.
-    role: editor
+  orcid: 0000-0002-4347-7525
+  git: klauer2207
+  email: [email protected]
+  affiliation: Airfinity Ltd.
+  role: editor
 Romain David:
-    orcid: 0000-0003-4073-7456
-    git: RomainDavid24
-    email: [email protected]
-    affiliation: ERINHA
-    role: editor
+  orcid: 0000-0003-4073-7456
+  git: RomainDavid24
+  email: [email protected]
+  affiliation: ERINHA
+  role: editor
 Simone Leo:
-    orcid: 0000-0001-8271-5429
-    git: simleo
-    affiliation: CRS4, IT
+  orcid: 0000-0001-8271-5429
+  git: simleo
+  affiliation: CRS4, IT
 Martin Cook:
-    git: martin-nc
-    email: [email protected]
-    role: editor
-    affiliation: ELIXIR Hub
+  git: martin-nc
+  email: [email protected]
+  role: editor
+  affiliation: ELIXIR Hub
 Erin Calhoun:
-    orcid: 0009-0003-3752-7156
-    git: erincalhoun
-    email: [email protected]
-    role: 
-    affiliation: ELIXIR Norway
+  orcid: 0009-0003-3752-7156
+  git: erincalhoun
+  email: [email protected]
+  role:
+  affiliation: ELIXIR Norway
 Nazeefa Fatima:
-    orcid: 0000-0001-7791-4984
-    git: Nazeeefa
-    email: [email protected]
-    role: 
-    affiliation: ELIXIR Norway
+  orcid: 0000-0001-7791-4984
+  git: Nazeeefa
+  email: [email protected]
+  role:
+  affiliation: ELIXIR Norway
 Aina Jené Cortada:
-    git: ainajene
-    email: [email protected]
-    orcid: 0000-0001-7721-7097
-    affiliation: European Genome-phenome Archive (EGA) / CRG
+  git: ainajene
+  email: [email protected]
+  orcid: 0000-0001-7721-7097
+  affiliation: European Genome-phenome Archive (EGA) / CRG
 Marcos Casado Barbero:
-    git: M-casado
-    email: [email protected]
-    orcid: 0000-0002-7747-6256
-    affiliation: European Genome-phenome Archive (EGA) / EMBL-EBI
+  git: M-casado
+  email: [email protected]
+  orcid: 0000-0002-7747-6256
+  affiliation: European Genome-phenome Archive (EGA) / EMBL-EBI
 Arnau Soler Costa:
-    git: solcos
-    email: [email protected]
-    orcid: 0000-0002-2853-6742
-    affiliation: European Genome-phenome Archive (EGA) / CRG
+  git: solcos
+  email: [email protected]
+  orcid: 0000-0002-2853-6742
+  affiliation: European Genome-phenome Archive (EGA) / CRG
 Ruben Brondeel:
-    orcid: 0000-0002-9876-4150
-    git: RubenBrondeel
-    affiliation: Sciensano
+  orcid: 0000-0002-9876-4150
+  git: RubenBrondeel
+  affiliation: Sciensano
 Koen Blot:
-    orcid: 0000-0002-0847-0133
-    affiliation: Sciensano
+  orcid: 0000-0002-0847-0133
+  affiliation: Sciensano
 Nina Van Goethem:
-    orcid: 0000-0001-7316-6990
-    affiliation: Sciensano
+  orcid: 0000-0001-7316-6990
+  affiliation: Sciensano
 Miriam Saso:
-    orcid: 0000-0002-1888-1913
-    affiliation: Sciensano
+  orcid: 0000-0002-1888-1913
+  affiliation: Sciensano
 Wolfgang Maier:
-    git: wm75
-    email: [email protected]
-    orcid: 0000-0002-9464-6640
-    affiliation: University of Freiburg / ELIXIR-DE
-Anna Asklöf: 
-    git: annaasklof
-    affiliation: SciLifeLab / Uppsala University 
+  git: wm75
+  email: [email protected]
+  orcid: 0000-0002-9464-6640
+  affiliation: University of Freiburg / ELIXIR-DE
+Anna Asklöf:
+  git: annaasklof
+  affiliation: SciLifeLab / Uppsala University
 Katarina Öjefors Stark:
-    orcid: 0000-0001-7970-7778
-    git: KatarinaOjeforsStark
-    affiliation: SciLifeLab / Uppsala University 
+  orcid: 0000-0001-7970-7778
+  git: KatarinaOjeforsStark
+  affiliation: SciLifeLab / Uppsala University
 Diana Pilvar:
-    git: diana-pilvar
-    email: [email protected]
-    orcid: 0000-0002-5788-2687
-    affiliation: University of Tartu / ELIXIR-Estonia
+  git: diana-pilvar
+  email: [email protected]
+  orcid: 0000-0002-5788-2687
+  affiliation: University of Tartu / ELIXIR-Estonia
 Robin Navest:
-    orcid: 0000-0002-0152-2092
-    git: rnavest
-    affiliation: Lygature
+  orcid: 0000-0002-0152-2092
+  git: rnavest
+  affiliation: Lygature
 Julia Lischke:
-    orcid: 0000-0002-5524-2838
-    git: 
-    affiliation: Lygature
+  orcid: 0000-0002-5524-2838
+  git:
+  affiliation: Lygature
 Jan-Willem Boiten:
-    orcid: 0000-0003-0327-638X
-    git: 
+  orcid: 0000-0003-0327-638X
+  git:
 Jeroen Belien:
-    orcid: 0000-0002-7160-5942
-    git: jambelien
-    affiliation: Health-RI
+  orcid: 0000-0002-7160-5942
+  git: jambelien
+  affiliation: Health-RI
 Clara Amid:
-    orcid: 0000-0001-6534-7425
-    git: 
-    affiliation: Erasmus Medical Center
+  orcid: 0000-0001-6534-7425
+  git:
+  affiliation: Erasmus Medical Center
 Angelica Maineri:
-    orcid: 0000-0002-6978-5278
-    git: AngelicaMaineri
-    affiliation: ODISSEI
+  orcid: 0000-0002-6978-5278
+  git: AngelicaMaineri
+  affiliation: ODISSEI
 Ricarda Braukmann:
-    orcid: 0000-0001-6383-7148
-    git: Ruecue
-    affiliation: DANS
+  orcid: 0000-0001-6383-7148
+  git: Ruecue
+  affiliation: DANS
 Simon Saldner:
-    git: ssaldner
-    email: [email protected]
-    affiliation: DANS-KNAW
-    orcid: 0000-0002-1145-7829
+  git: ssaldner
+  email: [email protected]
+  affiliation: DANS-KNAW
+  orcid: 0000-0002-1145-7829
 Dimitra Kondyli:
-    email: [email protected]
-    affiliation: EKKE
+  email: [email protected]
+  affiliation: EKKE
 Markus Tuominen:
-    email: [email protected]
-    affiliation: CESSDA ERIC / TAU-FSD
+  email: [email protected]
+  affiliation: CESSDA ERIC / TAU-FSD
 Vasso Kalaitzi:
-    email: [email protected]
-    affiliation: DANS-KNAW
-    orcid: 0000-0001-8337-120X
+  email: [email protected]
+  affiliation: DANS-KNAW
+  orcid: 0000-0001-8337-120X
+Wolmar Nyberg Åkerström:
+  git: wna-se
+  email: [email protected]
+  orcid: 0000-0002-3890-6620
+  affiliation: NBIS / ELIXIR-SE
diff --git a/_data/tool_and_resource_list.yml b/_data/tool_and_resource_list.yml
@@ -205,8 +205,9 @@
   id: dragen-gatk
   name: Dragen-GATK
   url: https://gatk.broadinstitute.org/hc/en-us/articles/360045944831
-- description: 'Dryad is an open-source, community-led data curation, publishing, and preservation platform for CC0 publicly available research data. Dryad has a long-term data preservation strategy, and is a Core Trust Seal Certified Merritt repository with storage in US and EU at the San Diego Supercomputing Center, DANS, and Zenodo. While data is undergoing peer review, it is embargoed if the related journal requires / allows this. Dryad is an independent non-profit that works directly with: researchers to publish datasets utilising best practices for discovery and reuse; publishers to support the integration of data availability statements and data citations into their workflows; and institutions to enable scalable campus support for research data management best practices at low cost. Costs are covered by institutional, publisher, and funder members, otherwise a one-time fee of $120 for authors to cover cost of curation and preservation. Dryad also receives direct funder support through
-    grants.'
+- description:
+    "Dryad is an open-source, community-led data curation, publishing, and preservation platform for CC0 publicly available research data. Dryad has a long-term data preservation strategy, and is a Core Trust Seal Certified Merritt repository with storage in US and EU at the San Diego Supercomputing Center, DANS, and Zenodo. While data is undergoing peer review, it is embargoed if the related journal requires / allows this. Dryad is an independent non-profit that works directly with: researchers to publish datasets utilising best practices for discovery and reuse; publishers to support the integration of data availability statements and data citations into their workflows; and institutions to enable scalable campus support for research data management best practices at low cost. Costs are covered by institutional, publisher, and funder members, otherwise a one-time fee of $120 for authors to cover cost of curation and preservation. Dryad also receives direct funder support through
+    grants."
   id: dryad
   name: Dryad
   registry:
@@ -233,7 +234,7 @@
     fairsharing: mya1ff
     tess: European Genome-phenome Archive (EGA)
   url: https://ega-archive.org/
-- description: 'The European Language Social Science Thesaurus (ELSST) is a broad-based, multilingual thesaurus for the social sciences. It is owned and published by the Consortium of European Social Science Data Archives (CESSDA) and its national Service Providers. The thesaurus consists of over 3,300 concepts and covers the core social science disciplines: politics, sociology, economics, education, law, crime, demography, health, employment, information, communication technology, and environmental science. ELSST is used for data discovery within CESSDA and facilitates access to data resources across Europe, independent of domain, resource, language, or vocabulary. ELSST is currently available in 16 languages: Danish, Dutch, Czech, English, Finnish, French, German, Greek, Hungarian, Icelandic, Lithuanian, Norwegian, Romanian, Slovenian, Spanish, and Swedish'
+- description: "The European Language Social Science Thesaurus (ELSST) is a broad-based, multilingual thesaurus for the social sciences. It is owned and published by the Consortium of European Social Science Data Archives (CESSDA) and its national Service Providers. The thesaurus consists of over 3,300 concepts and covers the core social science disciplines: politics, sociology, economics, education, law, crime, demography, health, employment, information, communication technology, and environmental science. ELSST is used for data discovery within CESSDA and facilitates access to data resources across Europe, independent of domain, resource, language, or vocabulary. ELSST is currently available in 16 languages: Danish, Dutch, Czech, English, Finnish, French, German, Greek, Hungarian, Icelandic, Lithuanian, Norwegian, Romanian, Slovenian, Spanish, and Swedish"
   id: european-language-social-science-thesaurus
   name: European Language Social Science Thesaurus (ELSST)
   registry:
@@ -361,7 +362,7 @@
   id: gitlab
   name: GitLab
   registry:
-    fairsharing: '530e61'
+    fairsharing: 530e61
     tess: GitLab
   url: https://about.gitlab.com/
 - description: GO is to perform enrichment analysis on gene sets.
@@ -731,3 +732,9 @@
   id: sars-cov2-data-hubs
   name: SARS-CoV-2 Data Hubs
   url: https://www.covid19dataportal.org/data-hubs
+- description: A web-based platform for sharing viral sequence data, initially for influenza data, and now for other pathogens (including SARS-CoV-2).
+  name: Global Initiative on Sharing All Influenza Data (GISAID)
+  registry:
+    fairsharing: 2f7f9f
+  id: gisaid
+  url: https://gisaid.org