Update pathogen-characterisation.md (#362)

* Update pathogen-characterisation.md harmonizing page description * fix tool * improve workflow --------- Co-authored-by: bedroesb <[email protected]>
elixir-europe · Sep 20, 2024 · 3f4a858 · 3f4a858
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diff --git a/.github/workflows/jekyll.yml b/.github/workflows/jekyll.yml
@@ -2,6 +2,7 @@ name: Jekyll site CI
 
 on:
   push:
+    branches: [ master, main ]
   pull_request:
     branches: [ master, main ]
   workflow_dispatch:

diff --git a/_data/tool_and_resource_list.yml b/_data/tool_and_resource_list.yml
@@ -1107,7 +1107,6 @@
   id: beauti
   name: BEAUti
   url: https://beast.community/beauti.html
-  regsitry:
 - description: QIIME 2 is a powerful, extensible, and decentralized microbiome analysis package with a focus on data and analysis transparency.
   id: qiime2
   name: QIIME 2
@@ -1129,7 +1128,6 @@
   id: covid19map
   name: COVID19 Disease Map
   url: https://covid19map.elixir-luxembourg.org/
-  regsitry:
 - description: Freyja is a tool to recover relative lineage abundances from mixed SARS-CoV-2 samples from a sequencing dataset (BAM aligned to the Hu-1 reference).
   id: freyja
   name: Freyja
@@ -1158,29 +1156,29 @@
   id: pigxs
   name: PiGx SARS-CoV-2 Wastewater Sequencing Pipeline
   url: https://github.com/BIMSBbioinfo/pigx_sars-cov-2
-  regsitry:
 - description: A GitHub repository from the CBG-ETHZ group offering tools for detecting SARS-CoV-2 variants in Switzerland.
   id: cowwid
   name: COWWID
   url: https://github.com/cbg-ethz/cowwid
-  regsitry:
 - description: A SARS-CoV-2 Contextual Data Specification from PHA4GE.
   id: sars-pha4ge
   name: SARS-CoV-2 Contextual Data Specification
   url: https://github.com/pha4ge/SARS-CoV-2-Contextual-Data-Specification
-  regsitry:
 - description: A data model to improve wastewater surveillance through interoperable data.
   id: phes-odm
   name: PHES-ODM
   url: https://github.com/Big-Life-Lab/PHES-ODM
-  regsitry:
 - description: A pipeline for lineage abundance estimation from wastewater sequencing data.
   id: vlq
   name: VLQ
   url: https://github.com/baymlab/wastewater_analysis
-  regsitry:
 - description: CFSAN Wastewater Analysis Pipeline to estimate the percentage of SARS-CoV-2 variants in a sample.
   id: c-wap
   name: C-WAP
   url: https://github.com/CFSAN-Biostatistics/C-WAP
-  regsitry:
+- description: Functional Enrichment Analysis and Network Construction
+  id: enrichr
+  name: Enrichr
+  registry:
+    biotools: enrichr
+  url: https://github.com/guokai8/EnrichR
diff --git a/data-analysis/pathogen-characterisation.md b/data-analysis/pathogen-characterisation.md
@@ -1,6 +1,6 @@
 ---
 title: Pathogen characterisation
-description: Generic workflows for different data types.
+description: Analysing Pathogen related data.
 contributors: [Eva Garcia Alvarez, Francesco Messina, Fotis Psomopoulos, Rafael Andrade Buono]
 page_id: pc_data_analysis
 redirect_from: /pathogen-characterisation/data-analysis