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Validation of the tools and page metadata #835

Validation of the tools and page metadata

Validation of the tools and page metadata #835

name: Validation of the tools and page metadata
on:
pull_request:
branches: [ master, main ]
schedule:
- cron: '0 13 * * 1'
workflow_dispatch:
jobs:
validation:
runs-on: ubuntu-latest
strategy:
matrix:
python-version: [3.8]
steps:
- name: Checkout
uses: actions/checkout@v3
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install ruamel.yaml requests python-frontmatter
- name: Run tool table 2 yaml
run: |
python var/tools_validator.py
registry-lookup:
if: |
github.repository_owner == 'elixir-europe' && github.event_name != 'pull_request'
runs-on: ubuntu-latest
strategy:
matrix:
python-version: [3.8]
steps:
- name: Checkout
uses: actions/checkout@v3
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install ruamel.yaml requests python-frontmatter
- name: Run regsitry lookup for the tools file
run: |
python var/tools_validator.py --reg --username ${{ secrets.FAIRSHARING_USERNAME }} --password "${{ secrets.FAIRSHARING_PASSWORD }}"
- name: Show differences
run: |
git diff --stat
- name: Create Pull Request
id: cpr
uses: peter-evans/create-pull-request@v3
with:
token: ${{ secrets.GITHUB_TOKEN }}
commit-message: Update tool/resource_list.yaml
title: 'Automatic tool/resource-list update'
body: |
This PR is automatically generated based on new links made between the tools and the registries: TeSS, Bio.tools and FAIRsharing.
Please verify if these changes are valid.
labels: |
automatic PR
reviewers: bedroesb
branch: list_updates
base: main
- name: Check output
run: |
echo "Pull Request Number - ${{ steps.cpr.outputs.pull-request-number }}"