Running with Docker

Pull from registry

BioValidator Docker image is stored in quay.io. It can be pulled into local environment by

docker pull quay.io/ebi-ait/biovalidator:1.0.0

Running in local environment

BioValidator can be run in two modes, either as a server or onetime script by providing schema and json as arguments.

Run in server mode

docker run -p 3020:3020 -d quay.io/ebi-ait/biovalidator:1.0.0 --server

Run in onetime mode

docker run quay.io/ebi-ait/biovalidator:1.0.0 --schema /path/to/schema.json --json /path/to/json.json

If you want an example schema, json to test the validator, you can clone this repository and use provided examples

git clone https://github.com/elixir-europe/biovalidator.git
cd biovalidator
docker run quay.io/ebi-ait/biovalidator:1.0.0 --schema ./examples/schemas/test-schema.json --json ./examples/objects/test-schema-valid.json