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Hotfix README
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bedroesb authored Nov 8, 2024
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Expand Up @@ -347,12 +347,13 @@ python mars_cli.py --development submit --submit-to-metabolights False --submit-

### Submit data files and isa-json and to biosamples and ENA

```bash
python mars_cli.py --credential-service-name biosamples --username-credentials <username> --file-transfer ftp --data-files ../data/ENA_data.R1.fastq.gz --submit-to-metabolights False --output final-isa ../data/biosamples-input-isa.json
```

## Deploy repository services

[To set up and run the MARS tool locally using Docker, follow these steps](../repository-services/README.md)


```bash
python mars_cli.py --credential-service-name biosamples --username-credentials <username> --file-transfer ftp --data-files ../data/ENA_data.R1.fastq.gz --submit-to-metabolights False --output final-isa ../data/biosamples-input-isa.json
```

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