initial revision

README.md

@@ -1,26 +1,17 @@
-# Obsidian Wikidata Sidebar Plugin
+# Obsidian Phylotree Plugin
 
-Load data from wikidata to a sidebar, using a direct text search or via mapped frontmatter properties.
+Display phylogenetic trees in Obsidian. Tree data is specified in a fenced code block in newick or nexus format, and the tree is visualised using the phylotree library.
 
 <br>
 
 ## Changelog
 
-### 0.2.0
-- Use selected text as search input, if available ([issue #3](https://github.com/echinopscis/obsidian-wikidata-plugin/issues/3)).
-- Add bracketed description text in entity selection list, if available ([issue #4](https://github.com/echinopscis/obsidian-wikidata-plugin/issues/4))
-- Correct display in select modal when called from frontmatter (shows full URL for entity id) ([issue #5](https://github.com/echinopscis/obsidian-wikidata-plugin/issues/5))
-- Bypass select modal if only one item found ([issue #6](https://github.com/echinopscis/obsidian-wikidata-plugin/issues/6))
-
 ### 0.1.0 Initial revision
 
 ### Features
 
-- Specify frontmatter mappings (eg DOI - [P356](https://www.wikidata.org/wiki/Property:P356))
-- Specify frontmatter property that holds a wikidata entity ID (Q-number)
-- Simple text search
-- Navigation through linked wikidata entities in the sidebar
-- Links to external conent (to wikidata and using identifiers attached to an entity
+- Adds newick and nexus fenced code blocks to Obsidian to specify phylogenetic trees for visualisation
+- Node click constructs a search for the node labels included in the clade
 
 ## Demo
 
@@ -32,52 +23,27 @@ TBC
 
 ## How to install
 
-Download the zip file named "wikidata-sidebar-plugin.zip" attached to the [latest release](https://github.com/echinopscis/obsidian-wikidata-plugin/releases/latest) and unzip in under the `.obsidian/plugins` directory under your Obsidian vault.
+Download the zip file named "phylotree-plugin.zip" attached to the [latest release](https://github.com/echinopscis/obsidian-wikidata-plugin/releases/latest) and unzip in under the `.obsidian/plugins` directory under your Obsidian vault.
 
 ## How to use
 
-### 1. To use frontmatter properties to retrieve associated wikidata entities
-Click the ribbon icon 🌍, or excute the command "Wikidata sidebar: Load wikidata from frontmatter".
+Create a fenced code block containing phylogenetic tree data, labelled either "newick" or "nexus" depending on the tree format used. Switch to view mode and you should see a visual representation of the tree. The visualisation is interactive: clicking on a node will execute a search across the Obsidian vault for all included node labels.
 
-### 2. To search wikidata
-Use the command "Wikidata sidebar: Search wikidata for sidebar".
-
-### 3. Select the wikidata entity from the search results.
-
-### 4. The entity will be loaded in a sidebar.
-
-## How to use settings
-
-### Frontmatter property mapping
-
-By default this is:
-```
-{
-  orcid: 'P496',
-  doi: 'P356',
-  ipni_name_id: 'P961',
-  ihcode: 'P5858',
-}
-```
-
-### Frontmatter property for the wikidata entity ID
-
-This defaults to `wikidata_entity_id`
 
 ## License
 
-[Wikidata sidebar plugin](https://github.com/echinopscis/obsidian-wikidata-plugin) is licensed under the MIT license. Refer to [LICENSE](/LICENSE.TXT) for more information.
+[Phylotree plugin](https://github.com/echinopscis/obsidian-phylotree-plugin) is licensed under the MIT license. Refer to [LICENSE](/LICENSE.TXT) for more information.
 
 <br>
 
 ## Contributing
 
 Feel free to contribute.
 
-You can create an [issue](https://github.com/echinopscis/obsidian-wikidata-plugin/issues) to report a bug, suggest an improvement for this plugin, ask a question, etc.
+You can create an [issue](https://github.com/echinopscis/obsidian-phylotree-plugin/issues) to report a bug, suggest an improvement for this plugin, ask a question, etc.
 
-You can make a [pull request](https://github.com/echinopscis/obsidian-wikidata-plugin/pulls) to contribute to this plugin development.
+You can make a [pull request](https://github.com/echinopscis/obsidian-phylotree-plugin/pulls) to contribute to this plugin development.
 
 ## Credits 
 
-Sincere thanks to Toby Hudson (AKA [99of9](https://github.com/99of9)) for his work on the browser plugin [Entity Explosion](https://github.com/99of9/Entity-Explosion) which inspired this plugin, and to [anpigon](https://github.com/anpigon) who developed the [obsidian book search plugin](https://github.com/anpigon/obsidian-book-search-plugin) which was used as the basis for this development.
+Thanks to the developers of phylotree, on which this plugin relies.

manifest.json

@@ -1,10 +1,10 @@
 {
-	"id": "obsidian-book-wikidata-sidebar-plugin",
-	"name": "Wikidata sidebar",
-	"version": "0.2.0",
+	"id": "obsidian-phylotree-plugin",
+	"name": "Phylotree Plugin",
+	"version": "1.0.0",
 	"minAppVersion": "0.12.0",
-	"description": "Wikidata",
+	"description": "Display newick and nexus code blocks using phylotree.",
 	"author": "nickynicolson",
-	"authorUrl": "https://github.com/nickynicolson",
-	"isDesktopOnly": false
+	"authorUrl": "https://github.com/echinopscis/obsidian-phylotree",
+	"isDesktopOnly": true
 }

package.json

@@ -1,15 +1,14 @@
 {
-  "name": "wikidata-sidebar-plugin",
-  "version": "0.5.11",
-  "description": "A wikidata plugin",
-  "homepage": "https://nickynicolson.github.io/wikidata-sidebar-plugin/",
+  "name": "phylotree-block-plugin",
+  "version": "0.1.0",
+  "description": "A phylotree block processor",
+  "homepage": "https://nickynicolson.github.io/phylotree-block-plugin/",
   "main": "main.js",
   "standard-version": {
     "t": ""
   },
   "keywords": [
-    "wikidata",
-    "sidebar",
+    "phylotree",
     "obsidian",
     "plugin"
   ],
@@ -47,10 +46,12 @@
     "husky": "^8.0.1",
     "jest": "^28.1.3",
     "obsidian": "latest",
+    "phylotree": "^2.0.1",
     "prettier": "^2.7.1",
     "standard-version": "^9.3.2",
     "ts-jest": "^28.0.7",
     "typescript": "4.4.4"
   },
-  "packageManager": "[email protected]"
+  "packageManager": "[email protected]",
+  "dependencies": {}
 }