New format of 'entries.json'

ebi-pf-team · Aug 19, 2024 · 18cafae · 18cafae
1 parent c47b15f
commit 18cafae
Showing 1 changed file with 3 additions and 2 deletions.
diff --git a/...n/java/uk/ac/ebi/interpro/scan/management/model/implementations/PrepareForOutputStep.java b/...n/java/uk/ac/ebi/interpro/scan/management/model/implementations/PrepareForOutputStep.java
@@ -894,10 +894,11 @@ public void getDomainsMap() {
             FileInputStream is = new FileInputStream(file);
             ObjectMapper mapper = new ObjectMapper();
             mapper.configure(JsonParser.Feature.ALLOW_UNQUOTED_FIELD_NAMES, true);
-            Map<String, Map<String, Object>> jsonMap = mapper.readValue(is, new TypeReference<>() {});
+            Map<String, Object> jsonMap = mapper.readValue(is, new TypeReference<>() {});
+            Map<String, Map<String, Object>> entries = (Map<String, Map<String, Object>>) jsonMap.get("entries");
             domainsMap = new ConcurrentHashMap<>();
 
-            for (Map.Entry<String, Map<String, Object>> entry : jsonMap.entrySet()) {
+            for (Map.Entry<String, Map<String, Object>> entry : entries.entrySet()) {
                 String accession = entry.getKey();
                 Map<String, Object> value = entry.getValue();