Drop typeguard + backport apptainer version #262
Workflow file for this run
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: CI | |
| on: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| types: [opened, synchronize, reopened] | |
| jobs: | |
| python: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.10' | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r requirements.txt | |
| pip install -e .[R] | |
| - name: Setup Apptainer | |
| uses: eWaterCycle/setup-apptainer@v2 | |
| with: | |
| apptainer-version: 1.1.3 | |
| - name: Pull Docker image | |
| run: docker pull ewatercycle/walrus-grpc4bmi:v0.2.0 | |
| - name: Cache Apptainer image | |
| id: cache-apptainer-image | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/.apptainer | |
| key: apptainer-image | |
| - name: Pull Apptainer image | |
| if: steps.cache-apptainer-image.outputs.cache-hit != 'true' | |
| run: apptainer pull docker://ewatercycle/walrus-grpc4bmi:v0.2.0 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| install-r: false | |
| - name: Install R dependencies | |
| run: | | |
| Rscript -e "install.packages('remotes')" | |
| Rscript -e "install.packages('R6')" | |
| - name: Test with pytest | |
| run: | | |
| pytest -vv --cov=grpc4bmi --cov-report xml | |
| - name: Correct coverage paths | |
| run: sed -i "s+$PWD/++g" coverage.xml | |
| - name: SonarCloud analysis | |
| uses: sonarsource/[email protected] | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }} | |
| cpp: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| submodules: true | |
| - name: Install grpc | |
| uses: ewatercycle/setup-grpc@v4 | |
| with: | |
| grpc-version: 1.27.2 | |
| - name: Copy grpc to system default | |
| run: | | |
| sudo rsync -a $GRPC_ROOT/ /usr/local | |
| sudo ldconfig | |
| - name: Build & install bmi-c | |
| run: mkdir -p build && cd build && cmake .. && sudo make install | |
| working-directory: cpp/bmi-c | |
| - name: Build dir | |
| run: mkdir -p cpp//build | |
| - name: configure | |
| run: cmake .. | |
| working-directory: cpp/build | |
| - name: make | |
| run: make VERBOSE=1 | |
| working-directory: cpp/build | |
| - name: ctest | |
| run: ctest -V | |
| working-directory: cpp/build |