Fixes for SonarQube #4268
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| name: Testing | |
| # Compile MET for feature branches | |
| # Run unit tests for pull requests | |
| on: | |
| push: | |
| branches: | |
| - develop | |
| - develop-ref | |
| - 'feature_**' | |
| - 'main_v**' | |
| - 'bugfix_**' | |
| paths-ignore: | |
| - 'docs/**' | |
| - '.github/pull_request_template.md' | |
| - '.github/ISSUE_TEMPLATE/**' | |
| - '.github/labels/**' | |
| - '**/README.md' | |
| - '**/LICENSE.md' | |
| pull_request: | |
| types: [opened, reopened, synchronize] | |
| branches: | |
| - develop | |
| - 'main_v**' | |
| paths-ignore: | |
| - 'docs/**' | |
| - '.github/pull_request_template.md' | |
| - '.github/ISSUE_TEMPLATE/**' | |
| - '.github/labels/**' | |
| - '**/README.md' | |
| - '**/LICENSE.md' | |
| workflow_dispatch: | |
| inputs: | |
| force_tests: | |
| description: 'Run the unit tests' | |
| default: true | |
| type: boolean | |
| env: | |
| DOCKERHUB_REPO: dtcenter/met-dev | |
| jobs: | |
| job_control: | |
| name: Determine which jobs to run | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set job controls | |
| id: job_status | |
| run: .github/jobs/set_job_controls.sh | |
| env: | |
| commit_msg: ${{ github.event.head_commit.message }} | |
| force_tests: ${{ github.event.inputs.force_tests }} | |
| outputs: | |
| run_compile: ${{ steps.job_status.outputs.run_compile }} | |
| run_push: ${{ steps.job_status.outputs.run_push }} | |
| run_unit_tests: ${{ steps.job_status.outputs.run_unit_tests }} | |
| run_diff: ${{ steps.job_status.outputs.run_diff }} | |
| run_update_truth: ${{ steps.job_status.outputs.run_update_truth }} | |
| met_base_repo: ${{ steps.job_status.outputs.met_base_repo }} | |
| met_base_tag: ${{ steps.job_status.outputs.met_base_tag }} | |
| branch_name: ${{ steps.job_status.outputs.branch_name }} | |
| truth_data_version: ${{ steps.job_status.outputs.truth_data_version }} | |
| input_data_version: ${{ steps.job_status.outputs.input_data_version }} | |
| compile: | |
| name: Compile MET | |
| runs-on: ubuntu-latest | |
| needs: job_control | |
| if: ${{ needs.job_control.outputs.run_compile == 'true' }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Create directories to store output | |
| run: mkdir -p ${RUNNER_WORKSPACE}/logs | |
| - name: Compile MET in Docker | |
| run: .github/jobs/build_docker_image.sh | |
| env: | |
| SOURCE_BRANCH: ${{ needs.job_control.outputs.branch_name }} | |
| MET_BASE_REPO: ${{ needs.job_control.outputs.met_base_repo }} | |
| MET_BASE_TAG: ${{ needs.job_control.outputs.met_base_tag }} | |
| MET_CONFIG_OPTS: '--enable-all' | |
| - name: Copy all build log files into logs directory | |
| if: always() | |
| run: cp ${GITHUB_WORKSPACE}/*.log ${RUNNER_WORKSPACE}/logs/ | |
| - name: Push Docker Image | |
| run: .github/jobs/push_docker_image.sh | |
| if: ${{ needs.job_control.outputs.run_push == 'true' }} | |
| env: | |
| SOURCE_BRANCH: ${{ needs.job_control.outputs.branch_name }} | |
| DOCKER_USERNAME: ${{ secrets.DOCKER_USERNAME }} | |
| DOCKER_PASSWORD: ${{ secrets.DOCKER_PASSWORD }} | |
| - name: Upload logs as artifact | |
| if: always() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: logs_compile | |
| path: ${{ runner.workspace }}/logs | |
| if-no-files-found: ignore | |
| update_input_data: | |
| name: Update input data volumes | |
| runs-on: ubuntu-latest | |
| needs: [job_control] | |
| if: ${{ needs.job_control.outputs.run_unit_tests == 'true' }} | |
| steps: | |
| - uses: dtcenter/metplus-action-data-update@v3 | |
| with: | |
| docker_name: ${{ secrets.DOCKER_USERNAME }} | |
| docker_pass: ${{ secrets.DOCKER_PASSWORD }} | |
| repo_name: ${{ github.repository }} | |
| data_prefix: unit_test | |
| branch_name: ${{ needs.job_control.outputs.truth_data_version }} | |
| docker_data_dir: /data/input/MET_test_data | |
| data_repo_dev: met-data-dev | |
| unit_1a: | |
| name: Unit 1a | |
| runs-on: ubuntu-latest | |
| needs: [job_control, update_input_data, compile] | |
| if: ${{ needs.job_control.outputs.run_unit_tests == 'true' }} | |
| strategy: | |
| matrix: | |
| include: | |
| - jobid: 'job1' | |
| tests: 'ascii2nc' | |
| - jobid: 'job2' | |
| tests: 'pb2nc madis2nc pcp_combine gen_ens_prod' | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Free disk space | |
| run: .github/jobs/free_disk_space.sh | |
| - name: Run Unit Tests in Docker | |
| run: .github/jobs/run_unit_docker.sh | |
| env: | |
| SOURCE_BRANCH: ${{ needs.job_control.outputs.branch_name }} | |
| TESTS: ${{ matrix.tests }} | |
| INPUT_DATA_VERSION: ${{ needs.job_control.outputs.input_data_version }}-all | |
| - name: Upload output as artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: unit_1a_${{ matrix.jobid }} | |
| path: ${{ runner.workspace }}/output | |
| - name: Upload logs as artifact | |
| if: always() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: logs_unit_1a_${{ matrix.jobid }} | |
| path: ${{ runner.workspace }}/logs | |
| if-no-files-found: ignore | |
| unit_1b: | |
| name: Unit 1b | |
| runs-on: ubuntu-latest | |
| needs: [job_control, update_input_data, compile] | |
| if: ${{ needs.job_control.outputs.run_unit_tests == 'true' }} | |
| strategy: | |
| matrix: | |
| include: | |
| - jobid: 'job1' | |
| tests: 'ascii2nc_indy pb2nc_indy tc_dland tc_pairs tc_stat plot_tc tc_rmw rmw_analysis tc_diag tc_gen' | |
| - jobid: 'job2' | |
| tests: 'met_test_scripts mode_multivar mode_graphics mtd regrid airnow gsi_tools netcdf modis series_analysis wwmca_regrid gen_vx_mask grid_weight interp_shape grid_diag grib_tables lidar2nc shift_data_plane trmm2nc aeronet wwmca_plot ioda2nc gaussian' | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Free disk space | |
| run: .github/jobs/free_disk_space.sh | |
| - name: Run Unit Tests in Docker | |
| run: .github/jobs/run_unit_docker.sh | |
| env: | |
| SOURCE_BRANCH: ${{ needs.job_control.outputs.branch_name }} | |
| TESTS: ${{ matrix.tests }} | |
| INPUT_DATA_VERSION: ${{ needs.job_control.outputs.input_data_version }}-all | |
| - name: Upload output as artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: unit_1b_${{ matrix.jobid }} | |
| path: ${{ runner.workspace }}/output | |
| - name: Upload logs as artifact | |
| if: always() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: logs_unit_1b_${{ matrix.jobid }} | |
| path: ${{ runner.workspace }}/logs | |
| if-no-files-found: ignore | |
| unit_1c: | |
| name: Unit 1c | |
| runs-on: ubuntu-latest | |
| needs: [job_control, update_input_data, compile] | |
| if: ${{ needs.job_control.outputs.run_unit_tests == 'true' }} | |
| strategy: | |
| matrix: | |
| include: | |
| - jobid: 'job1' | |
| tests: 'ref_config_lead_00 ref_config_lead_12' | |
| - jobid: 'job2' | |
| tests: 'ref_config_lead_24 ref_config_lead_48' | |
| - jobid: 'job3' | |
| tests: 'ref_config_lead_36' | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Free disk space | |
| run: .github/jobs/free_disk_space.sh | |
| - name: Run Unit Tests in Docker | |
| run: .github/jobs/run_unit_docker.sh | |
| env: | |
| SOURCE_BRANCH: ${{ needs.job_control.outputs.branch_name }} | |
| TESTS: ${{ matrix.tests }} | |
| INPUT_DATA_VERSION: ${{ needs.job_control.outputs.input_data_version }}-all | |
| - name: Upload output as artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: unit_1c_${{ matrix.jobid }} | |
| path: ${{ runner.workspace }}/output | |
| - name: Upload logs as artifact | |
| if: always() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: logs_rc_leads_${{ matrix.jobid }} | |
| path: ${{ runner.workspace }}/logs | |
| if-no-files-found: ignore | |
| unit_2c: | |
| name: Unit 2c | |
| runs-on: ubuntu-latest | |
| needs: [job_control, unit_1c] | |
| if: ${{ needs.job_control.outputs.run_unit_tests == 'true' }} | |
| strategy: | |
| matrix: | |
| include: | |
| - jobid: 'job1' | |
| tests: 'ref_config' | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Free disk space | |
| run: .github/jobs/free_disk_space.sh | |
| - name: Download ref_config_leads output from artifact | |
| uses: actions/download-artifact@v4 | |
| with: | |
| path: ${{ runner.workspace }}/output | |
| pattern: unit_1c_job* | |
| merge-multiple: true | |
| - name: Run Unit Tests in Docker | |
| run: .github/jobs/run_unit_docker.sh | |
| env: | |
| SOURCE_BRANCH: ${{ needs.job_control.outputs.branch_name }} | |
| TESTS: ${{ matrix.tests }} | |
| INPUT_DATA_VERSION: 'none' | |
| - name: Upload output as artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: unit_2c_${{ matrix.jobid }} | |
| path: ${{ runner.workspace }}/output | |
| - name: Upload logs as artifact | |
| if: always() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: logs_unit_2c_${{ matrix.jobid }} | |
| path: ${{ runner.workspace }}/logs | |
| if-no-files-found: ignore | |
| unit_2a: | |
| name: Unit 2a | |
| runs-on: ubuntu-latest | |
| needs: [job_control, unit_1a] | |
| if: ${{ needs.job_control.outputs.run_unit_tests == 'true' }} | |
| strategy: | |
| matrix: | |
| include: | |
| - jobid: 'job1' | |
| tests: 'point_stat stat_analysis_ps' | |
| - jobid: 'job2' | |
| tests: 'grid_stat stat_analysis_gs' | |
| - jobid: 'job3' | |
| tests: 'wavelet_stat stat_analysis_ws' | |
| - jobid: 'job4' | |
| tests: 'ensemble_stat stat_analysis_es' | |
| - jobid: 'job5' | |
| tests: 'ugrid' | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Free disk space | |
| run: .github/jobs/free_disk_space.sh | |
| - name: Download 1a output from artifact | |
| uses: actions/download-artifact@v4 | |
| with: | |
| path: ${{ runner.workspace }}/output | |
| pattern: unit_1a_job* | |
| merge-multiple: true | |
| - name: Run Unit Tests in Docker | |
| run: .github/jobs/run_unit_docker.sh | |
| env: | |
| SOURCE_BRANCH: ${{ needs.job_control.outputs.branch_name }} | |
| TESTS: ${{ matrix.tests }} | |
| INPUT_DATA_VERSION: ${{ needs.job_control.outputs.input_data_version }}-all | |
| - name: Upload output as artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: unit_2a_${{ matrix.jobid }} | |
| path: ${{ runner.workspace }}/output | |
| - name: Upload logs as artifact | |
| if: always() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: logs_unit_2a_${{ matrix.jobid }} | |
| path: ${{ runner.workspace }}/logs | |
| if-no-files-found: ignore | |
| unit_2b: | |
| name: Unit 2b | |
| runs-on: ubuntu-latest | |
| needs: [job_control, unit_1a] | |
| if: ${{ needs.job_control.outputs.run_unit_tests == 'true' }} | |
| strategy: | |
| matrix: | |
| include: | |
| - jobid: 'job1' | |
| tests: 'climatology_1.0deg' | |
| - jobid: 'job2' | |
| tests: 'climatology_1.5deg' | |
| - jobid: 'job3' | |
| tests: 'climatology_2.5deg' | |
| - jobid: 'job4' | |
| tests: 'climatology_mixed' | |
| - jobid: 'job5' | |
| tests: 'python point2grid plot_data_plane mode mode_analysis perc_thresh hira plot_point_obs quality_filter obs_summary duplicate_flag' | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Free disk space | |
| run: .github/jobs/free_disk_space.sh | |
| - name: Download 1a output from artifact | |
| uses: actions/download-artifact@v4 | |
| with: | |
| path: ${{ runner.workspace }}/output | |
| pattern: unit_1a_job* | |
| merge-multiple: true | |
| - name: Run Unit Tests in Docker | |
| run: .github/jobs/run_unit_docker.sh | |
| env: | |
| SOURCE_BRANCH: ${{ needs.job_control.outputs.branch_name }} | |
| TESTS: ${{ matrix.tests }} | |
| INPUT_DATA_VERSION: ${{ needs.job_control.outputs.input_data_version }}-all | |
| - name: Upload output as artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: unit_2b_${{ matrix.jobid }} | |
| path: ${{ runner.workspace }}/output | |
| - name: Upload logs as artifact | |
| if: always() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: logs_unit_2b_${{ matrix.jobid }} | |
| path: ${{ runner.workspace }}/logs | |
| if-no-files-found: ignore | |
| run_diffs: | |
| name: Check for Differences | |
| runs-on: ubuntu-latest | |
| needs: [job_control, unit_1b, unit_2a, unit_2b, unit_2c] | |
| if: ${{ needs.job_control.outputs.run_diff == 'true' }} | |
| steps: | |
| - name: Download data from previous jobs | |
| uses: actions/download-artifact@v4 | |
| - name: Copy test output into single directory | |
| run: | | |
| mkdir ${RUNNER_WORKSPACE}/output | |
| cp -r unit_*/* ${RUNNER_WORKSPACE}/output/ | |
| - uses: actions/checkout@v4 | |
| - name: Run Diff Tests in Docker | |
| run: .github/jobs/run_diff_docker.sh | |
| env: | |
| SOURCE_BRANCH: ${{ needs.job_control.outputs.branch_name }} | |
| RUN_UPDATE_TRUTH: ${{ needs.job_control.outputs.run_update_truth }} | |
| TRUTH_DATA_VERSION: ${{ needs.job_control.outputs.truth_data_version }} | |
| - name: Upload diff files as artifact | |
| if: always() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: diff | |
| path: ${{ runner.workspace }}/diff | |
| if-no-files-found: ignore | |
| - name: Upload logs as artifact | |
| if: always() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: logs_diff | |
| path: ${{ runner.workspace }}/logs | |
| if-no-files-found: ignore | |
| merge_logs: | |
| name: Merge Log Artifacts | |
| runs-on: ubuntu-latest | |
| needs: [run_diffs] | |
| if: ${{ always() }} | |
| steps: | |
| - name: Upload merged logs as artifact | |
| uses: actions/upload-artifact/merge@v4 | |
| with: | |
| name: logs | |
| pattern: logs_* | |
| delete-merged: true | |
| update_truth: | |
| name: Update Truth Data | |
| runs-on: ubuntu-latest | |
| needs: [job_control, unit_1b, unit_2a, unit_2b, unit_2c] | |
| if: ${{ needs.job_control.outputs.run_update_truth == 'true' }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Free disk space | |
| run: .github/jobs/free_disk_space.sh | |
| - name: Download data from previous jobs | |
| uses: actions/download-artifact@v4 | |
| - name: Copy test output into single directory | |
| run: | | |
| mkdir ${RUNNER_WORKSPACE}/met_test_truth | |
| cp -r unit_*/* ${RUNNER_WORKSPACE}/met_test_truth/ | |
| - name: Create Docker Data Volume | |
| run: .github/jobs/create_docker_truth.sh | |
| env: | |
| TRUTH_DATA_VERSION: ${{ needs.job_control.outputs.truth_data_version }} | |
| DOCKER_USERNAME: ${{ secrets.DOCKER_USERNAME }} | |
| DOCKER_PASSWORD: ${{ secrets.DOCKER_PASSWORD }} |