Shell script now process all four model domains.

anthro_emiss_scripts/Combining_SAFAR_EDGAR_HTAP/copy_SAFAR_and_merge_EDGAR_emissions.sh

@@ -3,7 +3,7 @@
 SRCDIR='../SAFAR/' 
 fileroot='wrfchemi_'
 times=( '00z' '12z' )
-domains=( 'd04' )
+domains=( 'd01' 'd02' 'd03' 'd04' )
 year='2015'
 months=( '01' '02' '03' '04' '05' '06' '07' '08' '09' '10' '11' '12' )
 
@@ -18,23 +18,15 @@ for MONTH in ${months[@]}; do
 			# copy the SAFAR emission file
 			cp ${SRCDIR}${filename} ${filename}
 
-			if [[ "$DOM" = "d01" || "$DOM" = "d02" || "$DOM" = "d03" ]]
-			then  # simply add the EDGAR emissions for domains 1, 2, and 3 into the file (replacing SAFAR data)
-
-				echo running ncks on $DOM
-				ncks -A -a ${EDGARDIR}${filename} ${filename}
-
-			else # copy the SAFAR emissions for domain 4, and then merge in EDGAR data
 
-				echo running merge script on $DOM
-				# merge the emissions data from EDGAR into these files
-				#     we use | instead of / as delimiter, in order to avoid problems with '/' in filepaths
-				sed "s|%%file%%|${filename}|g" merge_emissions_template.ncl > merge_emiss.temp1.ncl # set the filename
-				sed "s|%%edgar%%|"${EDGARDIR}"${filename}|g" merge_emiss.temp1.ncl > merge_emiss.temp2.ncl  # set the month
+			echo running merge script on $DOM
+			# merge the emissions data from EDGAR into these files
+			#     we use | instead of / as delimiter, in order to avoid problems with '/' in filepaths
+			sed "s|%%file%%|${filename}|g" merge_emissions_template.ncl > merge_emiss.temp1.ncl # set the filename
+			sed "s|%%edgar%%|"${EDGARDIR}"${filename}|g" merge_emiss.temp1.ncl > merge_emiss.temp2.ncl  # set the month
 
-				ncl merge_emiss.temp2.ncl &> log_merge_${TIME}_${DOM}_${MONTH}.txt
+			ncl merge_emiss.temp2.ncl &> log_merge_${TIME}_${DOM}_${MONTH}.txt
 
-			fi
 
 		done
 	done