Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Add Nextflow support #546

Draft
wants to merge 16 commits into
base: master
Choose a base branch
from
Draft

Add Nextflow support #546

wants to merge 16 commits into from

Commits on Oct 22, 2024

  1. Add initial nextflow support

    @Bond-009
    Bond-009 committed Oct 22, 2024
    Configuration menu
    Copy the full SHA
    39b9546 View commit details
    Browse the repository at this point in the history

  2. Add nextflow to tests

    @Bond-009
    Bond-009 committed Oct 22, 2024
    Configuration menu
    Copy the full SHA
    7ca0a48 View commit details
    Browse the repository at this point in the history

  3. Don't strip return value echo-function-file-input tests 

    Removes the trailing whitespace from the input files.
This simplifies the test cases and makes them more consistent.
    @Bond-009
    Bond-009 committed Oct 22, 2024
    Configuration menu
    Copy the full SHA
    a16a799 View commit details
    Browse the repository at this point in the history

  4. Add compile support for Nextflow

    @Bond-009
    Bond-009 committed Oct 22, 2024
    Configuration menu
    Copy the full SHA
    a1e1e73 View commit details
    Browse the repository at this point in the history

  5. Add linting support for Nextflow

    @Bond-009
    Bond-009 committed Oct 22, 2024
    Configuration menu
    Copy the full SHA
    687d2e2 View commit details
    Browse the repository at this point in the history

  6. Update Nix flake and add groovy

    @Bond-009
    Bond-009 committed Oct 22, 2024
    Configuration menu
    Copy the full SHA
    c099d02 View commit details
    Browse the repository at this point in the history

  7. Add nextflow linter to Nix flake

    @Bond-009
    Bond-009 committed Oct 22, 2024
    Configuration menu
    Copy the full SHA
    30beac5 View commit details
    Browse the repository at this point in the history

  8. Add nextflow to Nix flake

    @Bond-009
    Bond-009 committed Oct 22, 2024
    Configuration menu
    Copy the full SHA
    c278fc5 View commit details
    Browse the repository at this point in the history

  9. Disable some tests for nextflow

    @Bond-009
    Bond-009 committed Oct 22, 2024
    Configuration menu
    Copy the full SHA
    2f54c8f View commit details
    Browse the repository at this point in the history

  10. Fix import sorting

    @Bond-009
    Bond-009 committed Oct 22, 2024
    Configuration menu
    Copy the full SHA
    5511d66 View commit details
    Browse the repository at this point in the history

  11. Fix eslint regression

    @Bond-009
    Bond-009 committed Oct 22, 2024
    Configuration menu
    Copy the full SHA
    3a592ed View commit details
    Browse the repository at this point in the history

  12. Disable test_batch_compilation_no_fallback_runtime for nextflow

    @Bond-009
    Bond-009 committed Oct 22, 2024
    Configuration menu
    Copy the full SHA
    14ede47 View commit details
    Browse the repository at this point in the history

  13. Run black on code

    @Bond-009
    Bond-009 committed Oct 22, 2024
    Configuration menu
    Copy the full SHA
    7f9ad15 View commit details
    Browse the repository at this point in the history

Commits on Oct 23, 2024

  1. Fix type errors

    @Bond-009
    Bond-009 committed Oct 23, 2024
    Configuration menu
    Copy the full SHA
    1fee1cc View commit details
    Browse the repository at this point in the history

  2. Fix simple tests

    @Bond-009
    Bond-009 committed Oct 23, 2024
    Configuration menu
    Copy the full SHA
    a9c27c8 View commit details
    Browse the repository at this point in the history

Commits on Oct 28, 2024

  1. Run nextflow in offline mode

    @Bond-009
    Bond-009 committed Oct 28, 2024
    Configuration menu
    Copy the full SHA
    2e6ded9 View commit details
    Browse the repository at this point in the history