Add nextflow to Nix flake

dodona-edu · Oct 17, 2024 · 22df238 · 22df238
1 parent 9981861
commit 22df238
Showing 1 changed file with 5 additions and 1 deletion.
diff --git a/flake.nix b/flake.nix
@@ -105,7 +105,7 @@
         java-deps = [ pkgs.openjdk21 pkgs.checkstyle ];
         kotlin-deps = [ pkgs.kotlin pkgs.ktlint ];
         csharp-deps = [ pkgs.dotnetCorePackages.sdk_8_0 ];
-        nextflow-deps = [ pkgs.groovy nextflow-linter ];
+        nextflow-deps = [ pkgs.nextflow pkgs.groovy nextflow-linter ];
 
         all-other-dependencies = haskell-deps ++ node-deps ++ bash-deps
           ++ c-deps ++ java-deps ++ kotlin-deps ++ csharp-deps ++ nextflow-deps
@@ -180,6 +180,10 @@
                 name = "NODE_PATH";
                 prefix = "${ast}/lib/node_modules";
               }
+              {
+                name = "NXF_VER";
+                eval = "${builtins.head (pkgs.lib.splitString "-" pkgs.nextflow.version)}";
+              }
             ];
             commands = [
               {