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Feature/refactor for reduced complexity #11

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Feature/refactor for reduced complexity #11

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Commits on Mar 24, 2020

  1. code refactoring, goytorch integration, 1D example

    irinaespejo committed Mar 24, 2020
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  2. Merge pull request #1 from irinaespejo/refactor

    Refactor
    Irina Espejo committed Mar 24, 2020
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Commits on Mar 30, 2020

  1. 2D working example gpytorch

    irinaespejo committed Mar 30, 2020
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  2. 2D working example gpytorch

    irinaespejo committed Mar 30, 2020
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  3. Merge pull request #2 from irinaespejo/refactor

    Refactor
    Irina Espejo committed Mar 30, 2020
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  4. 2D working example gpytorch

    irinaespejo committed Mar 30, 2020
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  5. Merge pull request #3 from irinaespejo/refactor

    2D working example gpytorch
    Irina Espejo committed Mar 30, 2020
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Commits on Apr 6, 2020

  1. adding MES

    irinaespejo committed Apr 6, 2020
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  3. Merge pull request #4 from irinaespejo/refactor

    adding MES
    Irina Espejo committed Apr 6, 2020
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  4. add pic

    irinaespejo committed Apr 6, 2020
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  5. Merge branch 'master' of https://github.com/irinaespejo/excursion

    update
    irinaespejo committed Apr 6, 2020
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  6. add pic

    irinaespejo committed Apr 6, 2020
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  7. add pic

    irinaespejo committed Apr 6, 2020
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  8. add pic

    irinaespejo committed Apr 6, 2020
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Commits on Apr 7, 2020

  1. add pic

    irinaespejo committed Apr 7, 2020
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Commits on Apr 8, 2020

  1. add gifs

    irinaespejo committed Apr 8, 2020
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Commits on Apr 18, 2020

  1. new features

    irinaespejo committed Apr 18, 2020
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Commits on Apr 21, 2020

  1. starting to make changes

    irinaespejo committed Apr 21, 2020
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Commits on Apr 25, 2020

  1. reorganization in a ExcursionSetEstimation class

    irinaespejo committed Apr 25, 2020
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Commits on Apr 27, 2020

  1. working refactory all dimensions toy examples

    irinaespejo committed Apr 27, 2020
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Commits on Apr 28, 2020

  1. Merge pull request #5 from irinaespejo/refactor

    Refactor
    Irina Espejo committed Apr 28, 2020
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  2. up to date

    irinaespejo committed Apr 28, 2020
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  3. Merge pull request #6 from irinaespejo/refactor

    up to date
    Irina Espejo committed Apr 28, 2020
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Commits on May 3, 2020

  1. introduced GridKernelRegression

    irinaespejo committed May 3, 2020
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  2. introduced GridKernelRegression

    irinaespejo committed May 3, 2020
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  3. Merge pull request #7 from irinaespejo/refactor

    Refactor
    Irina Espejo committed May 3, 2020
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Commits on May 7, 2020

  1. CUDA device agnostic implementation

    irinaespejo committed May 7, 2020
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  2. Merge pull request #8 from irinaespejo/refactor

    CUDA device agnostic implementation
    Irina Espejo committed May 7, 2020
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Commits on May 10, 2020

  1. fix minor argparse bug

    irinaespejo committed May 10, 2020
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  2. Merge pull request #9 from irinaespejo/refactor

    fix minor argparse bug
    Irina Espejo committed May 10, 2020
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Commits on May 22, 2020

  1. Saving CUDA progress before major CUDA refactor to make code device a…

    …gnostic
    irinaespejo committed May 22, 2020
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Commits on May 24, 2020

  1. device agnostic implementation; tested on HPC GPUs

    irinaespejo committed May 24, 2020
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Commits on May 25, 2020

  1. black code format

    irinaespejo committed May 25, 2020
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  2. modify .gitignore include python+jupyternotebook

    irinaespejo committed May 25, 2020
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  3. .gitignore is now working

    irinaespejo committed May 25, 2020
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  4. Merge pull request #10 from irinaespejo/gpu

    Gpu
    Irina Espejo committed May 25, 2020
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Commits on Jun 2, 2020

  1. working lineal prior; need to fix hardcoded bits

    irinaespejo committed Jun 2, 2020
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Commits on Jun 3, 2020

  1. working linear prior; GPU test still left

    irinaespejo committed Jun 3, 2020
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  2. modify gitignore include testing folders

    irinaespejo committed Jun 3, 2020
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  3. changes

    irinaespejo committed Jun 3, 2020
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Commits on Jun 4, 2020

  1. eliminate click

    irinaespejo committed Jun 4, 2020
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  2. ignore results from developing

    irinaespejo committed Jun 4, 2020
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  3. ignore results from developing

    irinaespejo committed Jun 4, 2020
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  4. ignore results from developing

    irinaespejo committed Jun 4, 2020
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Commits on Jun 5, 2020

  1. solve merge conflicts, give preference to GPU features except in the …

    …developer new prior features
    irinaespejo committed Jun 5, 2020
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  2. solved conflict

    irinaespejo committed Jun 5, 2020
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Commits on Jul 12, 2020

  1. Circular prior introduced

    irinaespejo committed Jul 12, 2020
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  2. Black formatting

    irinaespejo committed Jul 12, 2020
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  3. Merge pull request #12 from irinaespejo/developer

    Developer
    Irina Espejo committed Jul 12, 2020
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Commits on Jul 15, 2020

  1. cleaning up results from testing

    irinaespejo committed Jul 15, 2020
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  2. Merge pull request #13 from irinaespejo/cleanup

    cleaning up results from testing
    Irina Espejo committed Jul 15, 2020
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Commits on Jul 20, 2020

  1. working 3D testcase; still left GPU test

    irinaespejo committed Jul 20, 2020
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Commits on Jul 23, 2020

  1. 3D testcase complete

    irinaespejo committed Jul 23, 2020
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Commits on Jul 26, 2020

  1. small fix to accomodate plotting in HPC

    irinaespejo committed Jul 26, 2020
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Commits on Aug 20, 2020

  1. more .to(gpu) where forgotten

    irinaespejo committed Aug 20, 2020
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Commits on Aug 25, 2020

  1. implementing CI + one test via pytest

    irinaespejo committed Aug 25, 2020
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  2. travis

    irinaespejo committed Aug 25, 2020
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  3. travis

    irinaespejo committed Aug 25, 2020
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  4. Update README.md

    Irina Espejo committed Aug 25, 2020
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Commits on Aug 26, 2020

  1. add .txt

    irinaespejo committed Aug 26, 2020
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  2. Merge branch 'testcase-3D' of https://github.com/irinaespejo/excursion

    …into testcase-3D
    irinaespejo committed Aug 26, 2020
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  3. typos

    irinaespejo committed Aug 26, 2020
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  4. typos

    irinaespejo committed Aug 26, 2020
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  5. requiriments

    irinaespejo committed Aug 26, 2020
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  6. typos

    irinaespejo committed Aug 26, 2020
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  7. fic pip installation

    irinaespejo committed Aug 26, 2020
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  8. typos

    irinaespejo committed Aug 26, 2020
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Commits on Sep 4, 2020

  1. changed requirements

    irinaespejo committed Sep 4, 2020
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  2. more

    irinaespejo committed Sep 4, 2020
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  3. fix travis

    irinaespejo committed Sep 4, 2020
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  4. travis

    irinaespejo committed Sep 4, 2020
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  5. travis

    irinaespejo committed Sep 4, 2020
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  6. travis

    irinaespejo committed Sep 4, 2020
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  7. small bug fix dimension independent

    irinaespejo committed Sep 4, 2020
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  8. small bug fix

    irinaespejo committed Sep 4, 2020
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  9. travis

    irinaespejo committed Sep 4, 2020
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  10. travis

    irinaespejo committed Sep 4, 2020
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  11. travis

    irinaespejo committed Sep 4, 2020
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  12. travis

    irinaespejo committed Sep 4, 2020
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  13. travis

    irinaespejo committed Sep 4, 2020
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  14. travis

    irinaespejo committed Sep 4, 2020
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Commits on Sep 5, 2020

  1. travis

    irinaespejo committed Sep 5, 2020
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  2. travis

    irinaespejo committed Sep 5, 2020
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  3. travis

    irinaespejo committed Sep 5, 2020
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  4. pytest passes

    irinaespejo committed Sep 5, 2020
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  5. Merge pull request #14 from irinaespejo/testcase-3D

    Testcase 3 d
    Irina Espejo committed Sep 5, 2020
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  6. coverage

    irinaespejo committed Sep 5, 2020
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  7. Update README.md

    Irina Espejo committed Sep 5, 2020
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  8. black

    irinaespejo committed Sep 5, 2020
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  9. Update README.md

    Irina Espejo committed Sep 5, 2020
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  10. Update README.md

    Irina Espejo committed Sep 5, 2020
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  11. Configuration menu
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  12. added more tests including a full one

    irinaespejo committed Sep 5, 2020
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  13. Merge pull request #15 from irinaespejo/testing

    added more tests including a full one
    Irina Espejo committed Sep 5, 2020
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Commits on Sep 7, 2020

  1. naive batch implemented

    irinaespejo committed Sep 7, 2020
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  2. KB batches working for 2D but not 1D

    irinaespejo committed Sep 7, 2020
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  3. KB, Naive and No batch working for all examples

    irinaespejo committed Sep 7, 2020
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Commits on Sep 8, 2020

  1. remove testing

    irinaespejo committed Sep 8, 2020
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Commits on Sep 22, 2020

  1. Update README.md

    Irina Espejo committed Sep 22, 2020
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  2. Update README.md

    Irina Espejo committed Sep 22, 2020
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Commits on Sep 23, 2020

  1. algorithm for batches trapped in infinite loop, solved, argmax wrong …

    …input dimension culprit
    irinaespejo committed Sep 23, 2020
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Commits on Sep 26, 2020

  1. left to do better plot

    irinaespejo committed Sep 26, 2020
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Commits on Sep 29, 2020

  1. solved weird bug 1D .diag() in batches

    irinaespejo committed Sep 29, 2020
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Commits on Oct 1, 2020

  1. solved smooth acq

    irinaespejo committed Oct 1, 2020
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  2. solved some bugs

    irinaespejo committed Oct 1, 2020
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Commits on Oct 8, 2020

  1. solved issues

    irinaespejo committed Oct 8, 2020
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Commits on Oct 13, 2020

  1. ready to merge in master: all good with non-batch

    irinaespejo committed Oct 13, 2020
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  2. solving bugs in testing travis

    irinaespejo committed Oct 13, 2020
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  3. more travis testing added for 2 and 3 dimensions

    irinaespejo committed Oct 13, 2020
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  4. Merge pull request #16 from irinaespejo/batches

    Batches
    Irina Espejo committed Oct 13, 2020
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Commits on Oct 15, 2020

  1. introduced more batch testing, all good, ready to merge

    irinaespejo committed Oct 15, 2020
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  2. forgot to upload algorithm specs for testing cases

    irinaespejo committed Oct 15, 2020
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  3. forgot to change testing function's names

    irinaespejo committed Oct 15, 2020
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  4. Merge pull request #18 from irinaespejo/batches

    Batches
    Irina Espejo committed Oct 15, 2020
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Commits on Oct 24, 2020

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Commits on Nov 5, 2020

  1. making tutorial 1D work again after refactor

    irinaespejo committed Nov 5, 2020
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  2. Merge pull request #19 from irinaespejo/notebooks

    Notebooks
    Irina Espejo committed Nov 5, 2020
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  3. changed name requirements.txy

    irinaespejo committed Nov 5, 2020
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  5. changed name requirements.txy

    irinaespejo committed Nov 5, 2020
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  6. changed name requirements.txy

    irinaespejo committed Nov 5, 2020
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  7. changed name requirements.txy

    irinaespejo committed Nov 5, 2020
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  8. Update README.md

    Irina Espejo committed Nov 5, 2020
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Commits on Nov 6, 2020

  1. requeriments

    irinaespejo committed Nov 6, 2020
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  3. tutorial 2D works after refactoring

    irinaespejo committed Nov 6, 2020
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  4. Merge pull request #20 from irinaespejo/notebooks

    tutorial 2D works after refactoring
    Irina Espejo committed Nov 6, 2020
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  5. Delete requirements.txt

    Irina Espejo committed Nov 6, 2020
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  6. Delete output.txt

    Irina Espejo committed Nov 6, 2020
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Commits on Nov 24, 2020

  1. high-level modification of testcases and configuration

    irinaespejo committed Nov 24, 2020
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  2. Merge remote-tracking branch 'origin/master'

    # Conflicts:
    #	excursion/plotting/twodim.py
    irinaespejo committed Nov 24, 2020
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  3. pycharm save configurations

    irinaespejo committed Nov 24, 2020
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Commits on May 26, 2021

  1. added some fixes to make it run

    ax1 in plot_gp for onedim had too many args in set_xticks. fixed file save path in tutorial_1d
    tutrie committed May 26, 2021
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  2. update function file path

    changed file save path in examlpes notebooks
    tutrie committed May 26, 2021
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  3. ran tutorial_1d

    tutrie committed May 26, 2021
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Commits on Jun 23, 2021

  1. some comments

    found redudant code commented it out
    tutrie committed Jun 23, 2021
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Commits on Jun 24, 2021

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  2. move excursionEstimator class

    made it it's own module within excursion package
    tutrie committed Jun 24, 2021
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  3. delete testcases init.py

    this does not need to be loaded everytime i import excursion. will move outside excursion package to top level
    tutrie committed Jun 24, 2021
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  4. fixed import error

    tutrie committed Jun 24, 2021
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  5. removed unused imports

    tutrie committed Jun 24, 2021
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Commits on Jun 27, 2021

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Commits on Jun 28, 2021

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  2. fixed commandline import error

    tutrie committed Jun 28, 2021
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  3. messing with structure some

    tutrie committed Jun 28, 2021
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  4. removed unused code

    tutrie committed Jun 28, 2021
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  5. reducing complexity

    removing files
    tutrie committed Jun 28, 2021
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  6. reduced imports line count by moving to package init

    made some note abt hyperparam for fitting new GP
    tutrie committed Jun 28, 2021
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  7. removed line in update posterior

    is this dead code?
    tutrie committed Jun 28, 2021
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Commits on Jun 29, 2021

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  3. code style formatting

    tutrie committed Jun 29, 2021
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  6. testing out PES

    also added some structure for a new estimator class
    tutrie committed Jun 29, 2021
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  8. made thresholds a tensor

    didnt work
    tutrie committed Jun 29, 2021
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  9. tried readding older code

    tutrie committed Jun 29, 2021
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  11. added paramter to threshold list to tensor call

    still broken
    tutrie committed Jun 29, 2021
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  13. removed some print statements

    tutrie committed Jun 29, 2021
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  14. PES working with 1D notebook

    tutrie committed Jun 29, 2021
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  15. added some parens for clarity

    tutrie committed Jun 29, 2021
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Commits on Jun 30, 2021

  1. code to eyeball runtime

    tutrie committed Jun 30, 2021
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Commits on Jul 1, 2021

  1. comparing results

    tutrie committed Jul 1, 2021
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Commits on Jul 9, 2021

  1. Update __init__.py

    tutrie committed Jul 9, 2021
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  2. Revert "Update __init__.py"

    This reverts commit 15bc7c8.
    tutrie committed Jul 9, 2021
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  3. manually merged some file

    tutrie committed Jul 9, 2021
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Commits on Jul 10, 2021

  1. fixing acquistition function

    tutrie committed Jul 10, 2021
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  2. removed if else by changing call signature

    made get_acq_values agnostic
    tutrie committed Jul 10, 2021
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  3. update PES for cuda

    made sure PES works with cuda
    tutrie committed Jul 10, 2021
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  5. changed value name to update

    tutrie committed Jul 10, 2021
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  6. running some tests, all good

    tutrie committed Jul 10, 2021
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  7. benchmarking

    tutrie committed Jul 10, 2021
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  8. benchedmark

    tutrie committed Jul 10, 2021
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Commits on Jul 22, 2021

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  5. checking something

    i know the diag of a cov matrix is just the simple variance but want to check. unsure why this operation is done two dif ways in onedim.py plot_GP
    tutrie committed Jul 22, 2021
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Commits on Jul 23, 2021

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Commits on Jul 25, 2021

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  2. got jump-start working

    sooo many issues with shapes of arrays.
    tutrie committed Jul 25, 2021
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Commits on Jul 26, 2021

  1. working intro tutorial

    tutrie committed Jul 26, 2021
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Commits on Jul 27, 2021

  1. added PES

    can't run with two learners yet, needs more memory optimization
    tutrie committed Jul 27, 2021
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  2. messed up MRO, fixed

    tutrie committed Jul 27, 2021
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  3. PES crashes in 2d

    tutrie committed Jul 27, 2021
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Commits on Jul 29, 2021

  1. changed notebook name

    tutrie committed Jul 29, 2021
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  2. refactoring model base.py

    i want to make adding new training data and fitting the model separate functions. made some changes and the tutorial looks right still
    tutrie committed Jul 29, 2021
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  4. slow changes

    still works
    tutrie committed Jul 29, 2021
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  5. spun off fit and update

    seems to work
    tutrie committed Jul 29, 2021
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  7. added cook function for init_points

    reducing reading complexity
    tutrie committed Jul 29, 2021
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  10. fixed jumpstart

    tutrie committed Jul 29, 2021
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Commits on Jul 30, 2021

  1. model initialized w/ zero points

    p sure no more multi func code left
    tutrie committed Jul 30, 2021
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  2. works

    basic_tutorial works for selected options WHILE using the test gp
    tutrie committed Jul 30, 2021
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Commits on Jul 31, 2021

  1. changes from meeting notes

    plot is no longer instance method, cook methods changed to check and set, logic fix on input check in builder method, added code from skopt source for better comparisons
    tutrie committed Jul 31, 2021
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  2. new logic for _tell and build_result

    decided to move build result before state update in _tell.
    
    also need to test support of when base_estimator/base_model is None
    tutrie committed Jul 31, 2021
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  3. implemented new algo spec

    added estimator parameter for setting the optimization function of the model's fitting function
    tutrie committed Jul 31, 2021
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Commits on Aug 1, 2021

  1. added prelim support for likelihood

    can now have ONLY gpytorch.likelihoods.gaussian_likelihood objects.
    
    added support for epsilon (noise multiplier) being 0 or greater.  (no check for >0 tho, which it can't be)
    tutrie committed Aug 1, 2021
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  3. remove print statements

    tutrie committed Aug 1, 2021
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Commits on Aug 2, 2021

  1. added gridkernel support

    tutrie committed Aug 2, 2021
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Commits on Aug 3, 2021

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  2. refactored for scikit learn

    moved likelihood builder into model builder along with model_kwargs so that the same learner object could be used for scikit learn in future
    tutrie committed Aug 3, 2021
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  4. minor update for last commit

    commented out some unused code
    tutrie committed Aug 3, 2021
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  5. added parabola nD example

    tested 4d and 5d,
    removed 1d&2d plotting modules from excursion_new/plotting_ package
    tutrie committed Aug 3, 2021
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Commits on Aug 4, 2021

  1. cleaning up file structure

    consolidating 1d/2d/3d test truth function examples to new folder.
    
    removing unused files from new folder
    
    consolidating pictures and assets
    tutrie committed Aug 4, 2021
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  2. added 3d plotting

    did more cleaning of files
    tutrie committed Aug 4, 2021
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  4. getting pes 2d to work

    tutrie committed Aug 4, 2021
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  5. added 2d benchmark notebook

    tutrie committed Aug 4, 2021
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Commits on Aug 5, 2021

  1. removing learner initiliaze method

    making progress commit
    tutrie committed Aug 5, 2021
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  2. removed learner initialize

    first call to ask on jump start will call acquistion function
    tutrie committed Aug 5, 2021
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  4. added private class variable to estimator

    added search space to reduce calls for converting objects in memory and having to store two instances of ExcursionProblem in the details variables
    tutrie committed Aug 5, 2021
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Commits on Aug 6, 2021

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  2. made log with result, refactored some variable names

    also testing to see if i can get the PES working
    tutrie committed Aug 6, 2021
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Commits on Aug 7, 2021

  1. fixed memory issue with PES

    behavior of loops causes memory to be copied and then stored when it didnt need to be.
    
    can speed up even more refactoring to use yield
    tutrie committed Aug 7, 2021
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Commits on Aug 8, 2021

  1. benchmarked 2d pes gpu

    tutrie committed Aug 8, 2021
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Commits on Aug 9, 2021

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Commits on Aug 11, 2021

  1. deleted legacy files, fixed MES builder, new .gitignore

    made acquisition builder signature for MES and PES the same by removing dtype and device from MES letting it be set by set_params instead
    tutrie committed Aug 11, 2021
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  2. Delete .idea directory

    tutrie committed Aug 11, 2021
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  3. removed old results

    tutrie committed Aug 11, 2021
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  4. Merge branch 'FEATURE/refactor_for_reduced_complexity' of https://git…

    …hub.com/tutrie/excursion into FEATURE/refactor_for_reduced_complexity
    tutrie committed Aug 11, 2021
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  5. Revert "Delete .idea directory"

    This reverts commit 33db5cd.
    tutrie committed Aug 11, 2021
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Commits on Aug 13, 2021

  1. found bug and update dtype implementation

    discovered bug with shared memory in the result object for the list objects. self.result.update updates lists of result objects for dif problems
    tutrie committed Aug 13, 2021
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  3. removed _tell and data object

    we use the excursionresult to store data don't need two copies
    tutrie committed Aug 13, 2021
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Commits on Aug 14, 2021

  1. updated import structure, deleted legacy, removed unsued code, create…

    …d test case and new example
    tutrie committed Aug 14, 2021
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  2. final deletes

    tutrie committed Aug 14, 2021
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