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2023 03 06 meeting notes

Ziwen Liu edited this page Mar 7, 2023 · 2 revisions

iohub Meeting Agenda 03/06/23

TODO from last meeting

First meeting!

Agenda

  • Devs meeting scheduling: biweekly, cancel if no items
  • User meeting: next week pilot, time TBD
  • User feedback slot: poll workshop interest
  • Use case documentation

PhenoSight integration

  • Nagendra will investigate the external dependencies that require TIFF
  • Ziwen and Ahmet Can will read I/O code and point to equivalent iohub calls

TIFF writer

  • Determine the metadata needed for downstream tools (CellPose, AICS segmentation, Cell profiler, etc.)

Other formats?

  • PNG
  • CZI?

Performance

  • Chunking, re-chunking, and pyramid generation
  • Benchmark: high-level in CI, low-level/data-specific scripts in /examples