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rBExIS

A package to exchange data and metadata in between R statistics and instances of the BExIS II data managemet workbench.

Install

#install devtools and add to libary
install.packages("devtools")
library(devtools)

#install required packages
install.packages("httr")
install.packages("XML")
install.packages("jsonlite")
install_github("BEXIS2/rBExIS", subdir = "rBExIS")

#add packages to the libary
library(httr)
library(jsonlite)
library(XML)
library(rBExIS)

# load/reload the bexis package functions
load_all("rBExIS")

# check package for consistency
check("rBExIS")

# Here start functions implemented by the package
require(rBExIS)

Download functionality

  • get list of all dataset ids
bexis_dataset_ids <- bexis.get.datasets()
  • get data from bexis from dataset with id = xy
bexis_data <- bexis.get.dataset_by(id = xy)

Access Metadata

  • get list of all metadata objects
bexis_metadata_list <- bexis.get.metadatas()
  • get metadata from bexis from dataset with id = xy
bexis_metadata <- bexis.get.metadata_by(id = xy)

Access Structure

  • get list of all structure ids
bexis_structures <- bexis.get.structures()
  • get structure from bexis with id = xy
bexis_structure <- bexis.get.structure_by(xy)

Contribute

  • Fork
  • Implement/Fix
  • Send pull request
  • Wait and pray!

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Exchange data and metadata between R and BExIS II

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