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[WIP] CNVkit tool definitions#93

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anton-khodak wants to merge 10 commits intocommon-workflow-library:masterfrom anton-khodak:master

+59,490

Commits on May 31, 2016

Initial incomplete cnvkit-batch tool definition
Anton Khodak
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Commits on Jun 10, 2016

Fix cnvkit-batch job
Anton Khodak
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Fix cnvkit-batch job once again
Anton Khodak
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remove stdout from test file
Anton Khodak
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confused letters
Anton Khodak
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Commits on Jun 12, 2016

Add a few more tools
Anton Khodak
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Commits on Jul 23, 2016

Update to CWL v.1.0
Anton Khodak
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Commits on Jul 27, 2016

Delete tools without jobs
Anton Khodak
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Remove all tools except from cnvkit
Anton Khodak
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Revert deleting files
Anton Khodak
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