Merge pull request #627 from rjleveque/bouss_set_fgout_fix #97

	# This workflow will install Python dependencies, run tests and lint with a single version of Python
	# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python

	name: Python application

	on:
	push:
	branches: [ "master" ]
	pull_request:
	branches: [ "master" ]

	permissions:
	contents: read

	jobs:
	build:

	runs-on: ubuntu-latest

	steps:
	- name: Set up Python 3.10
	uses: actions/setup-python@v5
	with:
	python-version: "3.10"
	- name: Checkout clawpack
	uses: actions/[email protected]
	with:
	repository: clawpack/clawpack
	- name: Install dependencies
	run: \|
	sudo apt-get update
	sudo apt-get install gfortran liblapack-pic liblapack-dev libnetcdf-dev libnetcdff-dev
	python -m pip install --upgrade pip
	pip install flake8 pytest
	- name: Setup clawpack super repository
	run: \|
	git submodule init
	git submodule update
	pip install --user -e .
	- name: Setup geoclaw
	run: \|
	cd geoclaw
	git checkout ${{ github.ref }}
	- name: Lint with flake8
	run: \|
	cd geoclaw
	# stop the build if there are Python syntax errors or undefined names
	flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics --exclude old_dtopotools.py
	# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
	flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
	- name: Test with pytest
	run: \|
	cd geoclaw
	pytest

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