Summary report creation for the COVID-19 PCR testing effort at the George Mason University Clinical Proteomics Laboratory.
This R-markdown script summarizes the COVID-19 testing data as performed at the CAP/CLIA accredited Clinical Proteomics Laboratory (CAP Number: 7223012; CLIA License: 49D2002076) at George Mason University.
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Clone github project.
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Add a copy of old ICA schedules (date prior to database setup) into an "old_ICA_schedules" subdirectory. This data cannot be shared via github due to HIPAA regulations.
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Open the script file in RStudio (or other editor).
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Update the following lines of code:
- line 3: set the author of the report
- line 60: set the path/filename to the most up-to-date Covid Database (make sure to use "\" for any "" when on a Windows operating system)
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Knit the markdown file to create a pdf report (click "knit" in RStudio).