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1. GraffiTE GraffiTE Public

   GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.

   R 110 5

2. BarcodeAsm BarcodeAsm Public

   C++

3. SeqLib SeqLib Public

   Forked from walaj/SeqLib

   C++ htslib/bwa-mem/fermi interface for interrogating sequence data

   C++

4. dotfiles dotfiles Public

   Emacs Lisp

5. bifrost_jaccard bifrost_jaccard Public

   Compute jaccard similarity matrix between colors in a bifrost compacted colored de Bruijn graph.

   C++

6. panmethyl panmethyl Public

   Map Pacbio methylation data to genome graphs.

   Python 3