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Add dual-wavelength sessions #9

Merged
merged 10 commits into from
Jul 1, 2024
Merged

Add dual-wavelength sessions #9

merged 10 commits into from
Jul 1, 2024

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weiglszonja
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Modify the conversion for dual-wavelength experiments:

Based on the data list received from Howe lab:

  • dual wavelength excitation source can be:
    • 470 and 405 -> Green fluorescence and isosbestic control (1 imaging file path, but the frame indices are different, e.g. even and odd frames are for green and for control -> can be determined from the behavior .mat file using the "orig_frame_indices" variable)
    • 470 and 570 -> Green and Red fluorescence (2 imaging file paths)

@weiglszonja
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Examples:

  • Grid 9 : 470 and 570 nm (Green and Red signals)
  • 842 : 470 and 405 (Green and isosbestic signal for Green)

@weiglszonja weiglszonja self-assigned this Jun 24, 2024
@weiglszonja weiglszonja mentioned this pull request Jun 24, 2024
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alessandratrapani
alessandratrapani approved these changes Jul 1, 2024
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LGTM!

@weiglszonja
Merge branch 'refs/heads/main' into add_dual_wavelength_session
cb70d0e 
# Conflicts:
#	src/howe_lab_to_nwb/vu2024/vu2024_convert_single_wavelength_session.py
#	src/howe_lab_to_nwb/vu2024/vu2024_requirements.txt
@weiglszonja weiglszonja merged commit 1543bee into main Jul 1, 2024
@weiglszonja weiglszonja deleted the add_dual_wavelength_session branch July 1, 2024 11:15
@weiglszonja weiglszonja mentioned this pull request Jul 1, 2024
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weiglszonja added a commit that referenced this pull request Jul 1, 2024
@weiglszonja
Merge pull request #12 from catalystneuro/follow_up
4d8f77a 
Follow up #9
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@alessandratrapani alessandratrapani alessandratrapani approved these changes

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@weiglszonja @alessandratrapani