Run Slides on Local Docker

docker run --name slides -p 8081:8080 -v rTutorial:/site -w /site -t cannin/nodejs-http-server

Remote Docker

docker run --name slides -p 8089:8080 -v ~/slides:/site -w /site -t cannin/nodejs-http-server

Generate PDF Using decktape

Download Decktape

./decktape/bin/phantomjs ./decktape/decktape.js reveal http://192.168.99.100:8081/presentations/overview.html ./presentations/overview.pdf

./decktape/bin/phantomjs ./decktape/decktape.js reveal http://192.168.99.100:8081/presentations/statisticalMethods.html ./presentations/statisticalMethods.pdf

./decktape/bin/phantomjs ./decktape/decktape.js reveal http://192.168.99.100:8081/presentations/cbioportal.html ./presentations/cbioportal.pdf

./decktape/bin/phantomjs ./decktape/decktape.js reveal http://192.168.99.100:8081/presentations/cellminer.html ./presentations/cellminer.pdf

./decktape/bin/phantomjs ./decktape/decktape.js reveal http://192.168.99.100:8081/presentations/pathwayCommons.html ./presentations/pathwayCommons.pdf

./decktape/bin/phantomjs ./decktape/decktape.js reveal http://192.168.99.100:8081/presentations/shiny.html ./presentations/shiny.pdf

./decktape/bin/phantomjs ./decktape/decktape.js reveal http://192.168.99.100:8081/presentations/usingR.html ./presentations/usingR.pdf

Debug Slide

r if(file.exists("debug.R")) { source("debug.R"); I(grid) }

Add content to

r if(file.exists("head.R")) { source("head.R"); I(head) }

Add Google Analytics Events

Reveal.addEventListener('slidechanged', function(event) { // event.previousSlide, event.currentSlide, event.indexh, event.indexv ga('send', 'event', 'Slide', 'click', event.currentSlide); });

Included Presentations

• usingR
• cellminer
• cbioportal
• installR
• shiny
• pathwayCommons
• statisticalMethods