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fastani: support Sequoia #1929

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7 changes: 0 additions & 7 deletions Formula/fastani.rb
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Original file line number Diff line number Diff line change
Expand Up @@ -7,13 +7,6 @@
license "Apache-2.0"
head "https://github.com/ParBLiSS/FastANI.git", branch: "master"

bottle do
root_url "https://ghcr.io/v2/brewsci/bio"
sha256 cellar: :any, arm64_sonoma: "f5b9dcfd5df5e9a14cc05025b7b3dee6b5978d5a8c7517b6f7b9bab5a7eb82eb"
sha256 cellar: :any, ventura: "49f020c561fd674cf61702631fcbc8fde29675cb9e64d34cf827e92cf5b33b04"
sha256 cellar: :any_skip_relocation, x86_64_linux: "2cacbeb0b1a6194ca2d0f5e389d639a5b4766e86cbde33834e97af90758516ea"
end

depends_on "cmake" => :build
depends_on "boost"
depends_on "gsl"
Expand All @@ -24,7 +17,7 @@
depends_on "libomp"
end

def install

Check warning on line 20 in Formula/fastani.rb

View workflow job for this annotation

GitHub Actions / build-bottles (macos-15)

`brew install --verbose --formula --build-bottle brewsci/bio/fastani` failed on macOS Sequoia (15) on Apple Silicon! 

/Applications/Xcode_16.app/Contents/Developer/usr/bin/make  -f CMakeFiles/fastANI.dir/build.make CMakeFiles/fastANI.dir/build
[ 66%] Building CXX object CMakeFiles/fastANI.dir/src/cgi/main.cpp.o
[ 66%] Building CXX object CMakeFiles/fastANI.dir/src/cgi/core_genome_identity.cpp.o
/opt/homebrew/Library/Homebrew/shims/mac/super/clang++  -I/tmp/fastani-20241019-11830-8njmiy/FastANI-1.34/src -std=c++11 -O3 -DNDEBUG -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk "-Xclang -fopenmp" -MD -MT CMakeFiles/fastANI.dir/src/cgi/main.cpp.o -MF CMakeFiles/fastANI.dir/src/cgi/main.cpp.o.d -o CMakeFiles/fastANI.dir/src/cgi/main.cpp.o -c /tmp/fastani-20241019-11830-8njmiy/FastANI-1.34/src/cgi/main.cpp
/opt/homebrew/Library/Homebrew/shims/mac/super/clang++  -I/tmp/fastani-20241019-11830-8njmiy/FastANI-1.34/src -std=c++11 -O3 -DNDEBUG -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk "-Xclang -fopenmp" -MD -MT CMakeFiles/fastANI.dir/src/cgi/core_genome_identity.cpp.o -MF CMakeFiles/fastANI.dir/src/cgi/core_genome_identity.cpp.o.d -o CMakeFiles/fastANI.dir/src/cgi/core_genome_identity.cpp.o -c /tmp/fastani-20241019-11830-8njmiy/FastANI-1.34/src/cgi/core_genome_identity.cpp
clang++clang++: : error: unknown argument: '-Xclang -fopenmp'
error: unknown argument: '-Xclang -fopenmp'
make[2]: *** [CMakeFiles/fastANI.dir/src/cgi/core_genome_identity.cpp.o] Error 1
make[2]: *** Waiting for unfinished jobs....
make[2]: *** [CMakeFiles/fastANI.dir/src/cgi/main.cpp.o] Error 1
make[1]: *** [CMakeFiles/fastANI.dir/all] Error 2
make: *** [all] Error 2


==> Formula
Tap: brewsci/bio
Path: /opt/homebrew/Library/Taps/brewsci/homebrew-bio/Formula/fastani.rb
==> Configuration
HOMEBREW_VERSION: 4.4.1-62-g6f17b06
ORIGIN: https://github.com/Homebrew/brew
HEAD: 6f17b0644771e0a1d7c15ac72471dae2ef87314a
Last commit: 21 hours ago
Core tap HEAD: db9a843066d27d7217ab0e813b17a7f6c880af52
Core tap last commit: 5 days ago
Core tap JSON: 19 Oct 14:51 UTC
Core cask tap HEAD: c0fd9d20c432ea2470b6f46415cce46ced667348
Core cask tap last commit: 6 days ago
Core cask tap JSON: 19 Oct 14:51 UTC
HOMEBREW_PREFIX: /opt/homebrew
HOMEBREW_CACHE: /Users/runner/Library/Caches/Homebrew
HOMEBREW_CASK_OPTS: ["--no-quarantine"]
HOMEBREW_COLOR: set
HOMEBREW_CURL_PATH: /usr/bin/curl
HOMEBREW_FAIL_LOG_LINES: 150
HOMEBREW_FORCE_VENDOR_RUBY: set
HOMEBREW_GITHUB_API_TOKEN: set
HOMEBREW_GIT_EMAIL: [email protected]
HOMEBREW_GIT_NAME: BrewTestBot
HOMEBREW_GIT_PATH: /usr/bin/git
HOMEBREW_LOGS: /Users/runner/work/homebrew-bio/homebrew-bio/logs
HOMEBREW_MAKE_JOBS: 3
HOMEBREW_NO_ANALYTICS: set
HOMEBREW_NO_AUTO_UPDATE: set
HOMEBREW_NO_EMOJI: set
HOMEBREW_NO_ENV_HINTS: set
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK: set
HOMEBREW_NO_INSTALL_CLEANUP: set
HOMEBREW_SORBET_RUNTIME: set
Homebrew Ruby: 3.3.5 => /opt/homebrew/Library/Homebrew/vendor/portable-ruby/3.3.5/bin/ruby
CPU: 3-core 64-bit dunno
Clang: 16.0.0 build 1600
Git: 2.39.5 => /usr/bin/git
Curl: 8.7.1 => /usr/bin/curl
macOS: 15.0-arm64
CLT: 16.0.0.0.1.1724870825
Xcode: 16.0 => /Applications/Xcode_16.app/Contents/Developer
Rosetta 2: false
==> ENV
HOMEBREW_CC: clang
HOMEBREW_CXX: clang++
CXXFLAGS: -std=c++11
MAKEFLAGS: -j3
CMAKE_PREFIX_PATH: /opt/homebrew/opt/icu4c@75:/opt/homebrew/opt/libomp:/opt/homebrew
CMAKE_INCLUDE_PATH: /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers
CMAKE_LIBRARY_PATH: /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries
PKG_CONFIG_PATH: /opt/homebrew/opt/icu4c@75/lib/pkgconfig:/opt/homebrew/opt/xz/lib/pkgconfig:/opt/homebrew/opt/lz4/lib/pkgconfig:/opt/homebrew/opt/zstd/lib/pkgconfig:/opt/homebrew/opt/gsl/lib/pkgconfig
PKG_CONFIG_LIBDIR: /usr/lib/pkgconfig:/opt/homebrew/Library/Homebrew/os/mac/pkgconfig/15
HOMEBREW_MAKE_JOBS: 3
HOMEBREW_GIT: /usr/bin/git
HOMEBREW_SDKROOT: /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk
ACLOCAL_PATH: /opt/homebrew/share/aclocal
PATH: /opt/homebrew/Library/Ho
# require C++11
ENV.append "CXXFLAGS", "-std=c++11"
# https://github.com/ParBLiSS/FastANI/issues/17 (macos clang opts for gcc)
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