==> Fetching brewsci/bio/libsbml ==> Downloading https://github.com/sbmlteam/libsbml/archive/refs/tags/v5.20.2.tar.gz Already downloaded: /home/runner/.cache/Homebrew/downloads/4f0db0ba99d841a87cbd808aee2af8926acfb1f90e0f09a24c8921853b83cff3--libsbml-5.20.2.tar.gz ==> Verifying checksum for '4f0db0ba99d841a87cbd808aee2af8926acfb1f90e0f09a24c8921853b83cff3--libsbml-5.20.2.tar.gz' ==> Installing libsbml from brewsci/bio /usr/bin/env tar --extract --no-same-owner --file /home/runner/.cache/Homebrew/downloads/4f0db0ba99d841a87cbd808aee2af8926acfb1f90e0f09a24c8921853b83cff3--libsbml-5.20.2.tar.gz --directory /tmp/homebrew-unpack20240425-6173-ub40jv /usr/bin/env cp -pR /tmp/homebrew-unpack20240425-6173-ub40jv/libsbml-5.20.2/. /tmp/libsbml-20240425-6173-37gkcx/libsbml-5.20.2 ==> cmake -S . -B build -DENABLE_FBC=ON -DENABLE_GROUPS=ON -DWITH_LIBXML=TRUE -DCMAKE_INSTALL_PREFIX=/home/linuxbrew/.linuxbrew/Cellar/libsbml/5.20.2 -DCMAKE_INSTALL_LIBDIR=lib -DCMAKE_BUILD_TYPE=Release -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_VERBOSE_MAKEFILE=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -Wno-dev -DBUILD_TESTING=OFF -- The C compiler identification is GNU 11.4.0 -- The CXX compiler identification is GNU 11.4.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/shims/linux/super/gcc-11 - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/shims/linux/super/g++-11 - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working C compiler: /home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/shims/linux/super/gcc-11 - skipped -- Detecting C compile features -- Detecting C compile features - done -- Found SWIG: /home/linuxbrew/.linuxbrew/bin/swig (found version "4.2.1") -- Found PkgConfig: /home/linuxbrew/.linuxbrew/bin/pkg-config (found version "0.29.2") -- Looking for sin in m -- Looking for sin in m - found -- Performing Test LIBXML_LIBXML_TEST -- Performing Test LIBXML_LIBXML_TEST - Failed -- LIBXML_LIBXML_TEST = -- Performing Test LIBXML_LIBXML_TEST2 -- Performing Test LIBXML_LIBXML_TEST2 - Failed -- LIBXML_LIBXML_TEST2 = CMake Error at CMakeModules/FindLIBXML.cmake:142 (message): Unable to compile a test executable against LIBXML LIBXML_INCLUDE_DIR = /usr/include/libxml2 LIBXML_LIBRARY = /home/linuxbrew/.linuxbrew/lib/libxml2.so Call Stack (most recent call first): CMakeLists.txt:446 (find_package) -- Configuring incomplete, errors occurred! ==> Formula Tap: brewsci/bio Path: /home/linuxbrew/.linuxbrew/Homebrew/Library/Taps/brewsci/homebrew-bio/Formula/libsbml.rb ==> Configuration HOMEBREW_VERSION: 4.2.19-85-g34ea988 ORIGIN: https://github.com/Homebrew/brew HEAD: 34ea98804dd617335bab6f8a68c1ea242a9e9584 Last commit: 9 hours ago Core tap JSON: 25 Apr 01:08 UTC HOMEBREW_PREFIX: /home/linuxbrew/.linuxbrew HOMEBREW_BOOTSNAP: set HOMEBREW_CACHE: /home/runner/.cache/Homebrew HOMEBREW_CASK_OPTS: [] HOMEBREW_CLEANUP_PERIODIC_FULL_DAYS: 3650 HOMEBREW_COLOR: set HOMEBREW_CURL_PATH: /usr/bin/curl HOMEBREW_FAIL_LOG_LINES: 150 HOMEBREW_FORCE_VENDOR_RUBY: set HOMEBREW_GIT_EMAIL: [email protected] HOMEBREW_GIT_NAME: BrewTestBot HOMEBREW_GIT_PATH: /usr/bin/git HOMEBREW_LOGS: /home/runner/work/homebrew-bio/homebrew-bio/logs HOMEBREW_MAKE_JOBS: 4 HOMEBREW_NO_ANALYTICS: set HOMEBREW_NO_AUTO_UPDATE: set HOMEBREW_NO_EMOJI: set HOMEBREW_NO_ENV_HINTS: set HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK: set HOMEBREW_NO_INSTALL_CLEANUP: set HOMEBREW_SORBET_RUNTIME: set Homebrew Ruby: 3.1.4 => /home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/vendor/portable-ruby/3.1.4/bin/ruby CPU: quad-core 64-bit zen3 Clang: 14.0.0 Git: 2.43.2 => /usr/bin/git Curl: 7.81.0 => /usr/bin/curl Kernel: Linux 6.5.0-1018-azure x86_64 GNU/Linux OS: Ubuntu 22.04.4 LTS (jammy) Host glibc: 2.35 /usr/bi

Process completed with exit code 1.

-- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/util/StringBuffer.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/util/memory.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/util/util.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/validator/ConsistencyValidator.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/validator/ConstraintMacros.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/validator/IdentifierConsistencyValidator.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/validator/InternalConsistencyValidator.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/validator/L1CompatibilityValidator.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/validator/L2v1CompatibilityValidator.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/validator/L2v2CompatibilityValidator.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/validator/L2v3CompatibilityValidator.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/validator/L2v4CompatibilityValidator.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/validator/L3v1CompatibilityValidator.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/validator/L3v2CompatibilityValidator.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/validator/MathMLConsistencyValidator.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/validator/ModelingPracticeValidator.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/validator/OverdeterminedValidator.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/validator/SBMLExternalValidator.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/validator/SBMLInternalValidator.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/validator/SBMLValidator.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/validator/SBOConsistencyValidator.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/validator/StrictUnitConsistencyValidator.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/validator/UnitConsistencyValidator.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/validator/VConstraint.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/validator/Validator.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/xml/ExpatAttributes.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/xml/ExpatHandler.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/xml/ExpatParser.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/xml/LibXMLAttributes.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/xml/LibXMLHandler.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/xml/LibXMLNamespaces.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/xml/LibXMLParser.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/xml/LibXMLTranscode.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/xml/XMLAttributes.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/xml/XMLBuffer.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/xml/XMLConstructorException.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/xml/XMLError.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/xml/XMLErrorLog.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/xml/XMLExtern.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/xml/XMLFileBuffer.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/xml/XMLHandler.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/xml/XMLInputStream.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/xml/XMLLogOverride.h -- Installing: /opt/homebrew/Cellar/libsbml/5.20.2/include/sbml/xml/XMLMemoryBuffer.h -- Installing: /opt/ho

Process completed with exit code 1.

-- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/util/StringBuffer.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/util/memory.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/util/util.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/validator/ConsistencyValidator.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/validator/ConstraintMacros.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/validator/IdentifierConsistencyValidator.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/validator/InternalConsistencyValidator.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/validator/L1CompatibilityValidator.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/validator/L2v1CompatibilityValidator.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/validator/L2v2CompatibilityValidator.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/validator/L2v3CompatibilityValidator.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/validator/L2v4CompatibilityValidator.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/validator/L3v1CompatibilityValidator.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/validator/L3v2CompatibilityValidator.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/validator/MathMLConsistencyValidator.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/validator/ModelingPracticeValidator.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/validator/OverdeterminedValidator.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/validator/SBMLExternalValidator.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/validator/SBMLInternalValidator.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/validator/SBMLValidator.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/validator/SBOConsistencyValidator.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/validator/StrictUnitConsistencyValidator.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/validator/UnitConsistencyValidator.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/validator/VConstraint.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/validator/Validator.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/xml/ExpatAttributes.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/xml/ExpatHandler.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/xml/ExpatParser.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/xml/LibXMLAttributes.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/xml/LibXMLHandler.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/xml/LibXMLNamespaces.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/xml/LibXMLParser.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/xml/LibXMLTranscode.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/xml/XMLAttributes.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/xml/XMLBuffer.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/xml/XMLConstructorException.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/xml/XMLError.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/xml/XMLErrorLog.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/xml/XMLExtern.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/xml/XMLFileBuffer.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/xml/XMLHandler.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/xml/XMLInputStream.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/xml/XMLLogOverride.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/xml/XMLMemoryBuffer.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/xml/XMLNamespaces.h -- Installing: /usr/local/Cellar/libsbml/5.20.2/include/sbml/xml/XMLNode

Process completed with exit code 1.

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

No files were found with the provided path: *.bottle.*. No artifacts will be uploaded.

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

No files were found with the provided path: *.bottle.*. No artifacts will be uploaded.

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.