Skip to content

Commit

Permalink
Browse files Browse the repository at this point in the history
  • Loading branch information
bruAristimunha committed Oct 26, 2024
1 parent 3cb8784 commit c164ed5
Show file tree
Hide file tree
Showing 177 changed files with 2,048 additions and 1,316 deletions.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file modified dev/_images/sphx_glr_plot_benchmark_preprocessing_001.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified dev/_images/sphx_glr_plot_benchmark_preprocessing_thumb.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
104 changes: 54 additions & 50 deletions dev/api.html

Large diffs are not rendered by default.

Original file line number Diff line number Diff line change
Expand Up @@ -572,7 +572,7 @@ <h3>Preprocessing<a class="headerlink" href="#preprocessing" title="Link to this
<a href="../../generated/braindecode.preprocessing.preprocess.html#braindecode.preprocessing.preprocess" title="braindecode.preprocessing.preprocess" class="sphx-glr-backref-module-braindecode-preprocessing sphx-glr-backref-type-py-function"><span class="n">preprocess</span></a><span class="p">(</span><a href="../../generated/braindecode.datasets.BaseConcatDataset.html#braindecode.datasets.BaseConcatDataset" title="braindecode.datasets.BaseConcatDataset" class="sphx-glr-backref-module-braindecode-datasets sphx-glr-backref-type-py-class sphx-glr-backref-instance"><span class="n">test_set</span></a><span class="p">,</span> <span class="p">[</span><a href="../../generated/braindecode.preprocessing.Preprocessor.html#braindecode.preprocessing.Preprocessor" title="braindecode.preprocessing.Preprocessor" class="sphx-glr-backref-module-braindecode-preprocessing sphx-glr-backref-type-py-class"><span class="n">Preprocessor</span></a><span class="p">(</span><span class="s2">&quot;crop&quot;</span><span class="p">,</span> <span class="n">tmin</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">tmax</span><span class="o">=</span><span class="mi">24</span><span class="p">)],</span> <span class="n">n_jobs</span><span class="o">=-</span><span class="mi">1</span><span class="p">)</span>
</pre></div>
</div>
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>&lt;braindecode.datasets.base.BaseConcatDataset object at 0x7fe0e3127a00&gt;
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>&lt;braindecode.datasets.base.BaseConcatDataset object at 0x7f022d14d240&gt;
</pre></div>
</div>
<p>In time series targets setup, targets variables are stored in mne.Raw object as channels
Expand Down Expand Up @@ -805,14 +805,14 @@ <h2>Training<a class="headerlink" href="#training" title="Link to this heading">
</div>
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span> epoch r2_train r2_valid train_loss valid_loss lr dur
------- ---------- ---------- ------------ ------------ ------ ------
1 -23.7826 -4.6087 1.8225 11.7419 0.0006 0.5519
2 -1.1990 -0.1716 1.5134 2.6475 0.0006 0.4478
3 -0.3654 -0.4985 1.2625 3.4645 0.0005 0.4657
4 -0.4383 -0.2731 1.2058 2.9438 0.0004 0.4473
5 -0.5982 -0.1512 1.1027 2.6529 0.0002 0.4545
6 -0.6090 -0.1255 1.1121 2.5886 0.0001 0.4869
7 -0.4455 -0.1445 0.9618 2.6339 0.0000 0.4477
8 -0.2790 -0.1755 1.0927 2.7063 0.0000 0.4640
1 -23.7826 -4.6087 1.8225 11.7419 0.0006 0.5229
2 -1.1990 -0.1716 1.5134 2.6475 0.0006 0.4619
3 -0.3654 -0.4985 1.2625 3.4645 0.0005 0.4639
4 -0.4383 -0.2731 1.2058 2.9438 0.0004 0.4521
5 -0.5982 -0.1512 1.1027 2.6529 0.0002 0.4672
6 -0.6090 -0.1255 1.1121 2.5886 0.0001 0.4525
7 -0.4455 -0.1445 0.9618 2.6339 0.0000 0.4766
8 -0.2790 -0.1755 1.0927 2.7063 0.0000 0.4523
</pre></div>
</div>
<p>Obtaining predictions and targets for the test, train, and validation dataset</p>
Expand Down Expand Up @@ -933,8 +933,8 @@ <h2>Plot Results<a class="headerlink" href="#plot-results" title="Link to this h
<a href="https://matplotlib.org/stable/api/_as_gen/matplotlib.pyplot.tight_layout.html#matplotlib.pyplot.tight_layout" title="matplotlib.pyplot.tight_layout" class="sphx-glr-backref-module-matplotlib-pyplot sphx-glr-backref-type-py-function"><span class="n">plt</span><span class="o">.</span><span class="n">tight_layout</span></a><span class="p">()</span>
</pre></div>
</div>
<img src="../../_images/sphx_glr_plot_bcic_iv_4_ecog_cropped_002.png" srcset="../../_images/sphx_glr_plot_bcic_iv_4_ecog_cropped_002.png" alt="plot bcic iv 4 ecog cropped" class = "sphx-glr-single-img"/><p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (1 minutes 27.386 seconds)</p>
<p><strong>Estimated memory usage:</strong> 1370 MB</p>
<img src="../../_images/sphx_glr_plot_bcic_iv_4_ecog_cropped_002.png" srcset="../../_images/sphx_glr_plot_bcic_iv_4_ecog_cropped_002.png" alt="plot bcic iv 4 ecog cropped" class = "sphx-glr-single-img"/><p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (1 minutes 2.553 seconds)</p>
<p><strong>Estimated memory usage:</strong> 1323 MB</p>
<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-advanced-training-plot-bcic-iv-4-ecog-cropped-py">
<div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
<p><a class="reference download internal" download="" href="../../_downloads/10fc813a8f78253f4bf301264950f5c1/plot_bcic_iv_4_ecog_cropped.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_bcic_iv_4_ecog_cropped.ipynb</span></code></a></p>
Expand Down
12 changes: 6 additions & 6 deletions dev/auto_examples/advanced_training/plot_data_augmentation.html
Original file line number Diff line number Diff line change
Expand Up @@ -566,7 +566,7 @@ <h3><a class="toc-backref" href="#id3" role="doc-backlink">Preprocessing</a><a c
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>/home/runner/work/braindecode/braindecode/braindecode/preprocessing/preprocess.py:69: UserWarning: Preprocessing choices with lambda functions cannot be saved.
warn(&quot;Preprocessing choices with lambda functions cannot be saved.&quot;)

&lt;braindecode.datasets.moabb.MOABBDataset object at 0x7fe1b3262260&gt;
&lt;braindecode.datasets.moabb.MOABBDataset object at 0x7f02fd77cca0&gt;
</pre></div>
</div>
</section>
Expand Down Expand Up @@ -756,10 +756,10 @@ <h3><a class="toc-backref" href="#id10" role="doc-backlink">Create an EEGClassif
</div>
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span> epoch train_accuracy train_loss valid_acc valid_accuracy valid_loss lr dur
------- ---------------- ------------ ----------- ---------------- ------------ ------ ------
1 0.2639 1.4655 0.2639 0.2639 1.5266 0.0006 2.0352
2 0.3299 1.3119 0.3194 0.3194 1.3948 0.0005 1.8621
3 0.4757 1.1941 0.2986 0.2986 1.3259 0.0002 1.8621
4 0.5625 1.1671 0.3333 0.3333 1.3025 0.0000 1.8483
1 0.2639 1.4655 0.2639 0.2639 1.5266 0.0006 1.7497
2 0.3299 1.3119 0.3194 0.3194 1.3948 0.0005 1.5807
3 0.4757 1.1941 0.2986 0.2986 1.3259 0.0002 1.5874
4 0.5625 1.1671 0.3333 0.3333 1.3025 0.0000 1.6060

&lt;class &#39;braindecode.classifier.EEGClassifier&#39;&gt;[initialized](
module_=============================================================================================================================================
Expand Down Expand Up @@ -813,7 +813,7 @@ <h3><a class="toc-backref" href="#id12" role="doc-backlink">Setting the data aug
<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><a href="../../generated/braindecode.datasets.BaseConcatDataset.html#braindecode.datasets.BaseConcatDataset" title="braindecode.datasets.BaseConcatDataset" class="sphx-glr-backref-module-braindecode-datasets sphx-glr-backref-type-py-class sphx-glr-backref-instance"><span class="n">train_set</span></a><span class="o">.</span><a href="../../generated/braindecode.augmentation.FrequencyShift.html#braindecode.augmentation.FrequencyShift" title="braindecode.augmentation.FrequencyShift" class="sphx-glr-backref-module-braindecode-augmentation sphx-glr-backref-type-py-class sphx-glr-backref-instance"><span class="n">transform</span></a> <span class="o">=</span> <a href="../../generated/braindecode.augmentation.Compose.html#braindecode.augmentation.Compose" title="braindecode.augmentation.Compose" class="sphx-glr-backref-module-braindecode-augmentation sphx-glr-backref-type-py-class sphx-glr-backref-instance"><span class="n">composed_transforms</span></a>
</pre></div>
</div>
<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 18.571 seconds)</p>
<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 17.498 seconds)</p>
<p><strong>Estimated memory usage:</strong> 1169 MB</p>
<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-advanced-training-plot-data-augmentation-py">
<div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -587,7 +587,7 @@ <h3><a class="toc-backref" href="#id10" role="doc-backlink">Preprocessing</a><a
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>/home/runner/work/braindecode/braindecode/braindecode/preprocessing/preprocess.py:69: UserWarning: Preprocessing choices with lambda functions cannot be saved.
warn(&quot;Preprocessing choices with lambda functions cannot be saved.&quot;)

&lt;braindecode.datasets.moabb.MOABBDataset object at 0x7fe1b32cca00&gt;
&lt;braindecode.datasets.moabb.MOABBDataset object at 0x7f02fd7f8790&gt;
</pre></div>
</div>
</section>
Expand Down Expand Up @@ -1352,8 +1352,8 @@ <h3><a class="toc-backref" href="#id19" role="doc-backlink">References</a><a cla
Journal of Neural Engineering, 18(4), 046020.</p>
</aside>
</aside>
<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 32.672 seconds)</p>
<p><strong>Estimated memory usage:</strong> 825 MB</p>
<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 32.916 seconds)</p>
<p><strong>Estimated memory usage:</strong> 858 MB</p>
<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-advanced-training-plot-data-augmentation-search-py">
<div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
<p><a class="reference download internal" download="" href="../../_downloads/2466f8ec5c733d0bd65e187b45d875cc/plot_data_augmentation_search.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_data_augmentation_search.ipynb</span></code></a></p>
Expand Down
Loading

0 comments on commit c164ed5

Please sign in to comment.