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120 changes: 58 additions & 62 deletions dev/api.html

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Expand Up @@ -605,7 +605,7 @@ <h3>Preprocessing<a class="headerlink" href="#preprocessing" title="Link to this
<a href="../../generated/braindecode.preprocessing.preprocess.html#braindecode.preprocessing.preprocess" title="braindecode.preprocessing.preprocess" class="sphx-glr-backref-module-braindecode-preprocessing sphx-glr-backref-type-py-function"><span class="n">preprocess</span></a><span class="p">(</span><a href="../../generated/braindecode.datasets.BaseConcatDataset.html#braindecode.datasets.BaseConcatDataset" title="braindecode.datasets.BaseConcatDataset" class="sphx-glr-backref-module-braindecode-datasets sphx-glr-backref-type-py-class sphx-glr-backref-instance"><span class="n">test_set</span></a><span class="p">,</span> <span class="p">[</span><a href="../../generated/braindecode.preprocessing.Preprocessor.html#braindecode.preprocessing.Preprocessor" title="braindecode.preprocessing.Preprocessor" class="sphx-glr-backref-module-braindecode-preprocessing sphx-glr-backref-type-py-class"><span class="n">Preprocessor</span></a><span class="p">(</span><span class="s2">&quot;crop&quot;</span><span class="p">,</span> <span class="n">tmin</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">tmax</span><span class="o">=</span><span class="mi">24</span><span class="p">)],</span> <span class="n">n_jobs</span><span class="o">=-</span><span class="mi">1</span><span class="p">)</span>
</pre></div>
</div>
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>&lt;braindecode.datasets.base.BaseConcatDataset object at 0x7fa045570ca0&gt;
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>&lt;braindecode.datasets.base.BaseConcatDataset object at 0x7f136a343dc0&gt;
</pre></div>
</div>
<p>In time series targets setup, targets variables are stored in mne.Raw object as channels
Expand Down Expand Up @@ -842,14 +842,14 @@ <h2>Training<a class="headerlink" href="#training" title="Link to this heading">
</div>
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span> epoch r2_train r2_valid train_loss valid_loss lr dur
------- ---------- ---------- ------------ ------------ ------ ------
1 -23.7826 -4.6087 1.8225 11.7419 0.0006 0.5356
2 -1.1990 -0.1716 1.5134 2.6475 0.0006 0.4562
3 -0.3654 -0.4985 1.2625 3.4645 0.0005 0.4686
4 -0.4383 -0.2731 1.2058 2.9438 0.0004 0.4497
5 -0.5982 -0.1512 1.1027 2.6529 0.0002 0.4739
6 -0.6090 -0.1255 1.1121 2.5886 0.0001 0.4488
7 -0.4455 -0.1445 0.9618 2.6339 0.0000 0.4512
8 -0.2790 -0.1755 1.0927 2.7063 0.0000 0.5093
1 -23.7826 -4.6087 1.8225 11.7419 0.0006 0.5310
2 -1.1990 -0.1716 1.5134 2.6475 0.0006 0.4736
3 -0.3654 -0.4985 1.2625 3.4645 0.0005 0.4671
4 -0.4383 -0.2731 1.2058 2.9438 0.0004 0.4621
5 -0.5982 -0.1512 1.1027 2.6529 0.0002 0.4680
6 -0.6090 -0.1255 1.1121 2.5886 0.0001 0.4514
7 -0.4455 -0.1445 0.9618 2.6339 0.0000 0.4753
8 -0.2790 -0.1755 1.0927 2.7063 0.0000 0.4502
</pre></div>
</div>
<p>Obtaining predictions and targets for the test, train, and validation dataset</p>
Expand Down Expand Up @@ -970,8 +970,8 @@ <h2>Plot Results<a class="headerlink" href="#plot-results" title="Link to this h
<a href="https://matplotlib.org/stable/api/_as_gen/matplotlib.pyplot.tight_layout.html#matplotlib.pyplot.tight_layout" title="matplotlib.pyplot.tight_layout" class="sphx-glr-backref-module-matplotlib-pyplot sphx-glr-backref-type-py-function"><span class="n">plt</span><span class="o">.</span><span class="n">tight_layout</span></a><span class="p">()</span>
</pre></div>
</div>
<img src="../../_images/sphx_glr_plot_bcic_iv_4_ecog_cropped_002.png" srcset="../../_images/sphx_glr_plot_bcic_iv_4_ecog_cropped_002.png" alt="plot bcic iv 4 ecog cropped" class = "sphx-glr-single-img"/><p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (1 minutes 2.861 seconds)</p>
<p><strong>Estimated memory usage:</strong> 1344 MB</p>
<img src="../../_images/sphx_glr_plot_bcic_iv_4_ecog_cropped_002.png" srcset="../../_images/sphx_glr_plot_bcic_iv_4_ecog_cropped_002.png" alt="plot bcic iv 4 ecog cropped" class = "sphx-glr-single-img"/><p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (1 minutes 5.215 seconds)</p>
<p><strong>Estimated memory usage:</strong> 1687 MB</p>
<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-advanced-training-plot-bcic-iv-4-ecog-cropped-py">
<div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
<p><a class="reference download internal" download="" href="../../_downloads/10fc813a8f78253f4bf301264950f5c1/plot_bcic_iv_4_ecog_cropped.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_bcic_iv_4_ecog_cropped.ipynb</span></code></a></p>
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14 changes: 7 additions & 7 deletions dev/auto_examples/advanced_training/plot_data_augmentation.html
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Expand Up @@ -599,7 +599,7 @@ <h3><a class="toc-backref" href="#id3" role="doc-backlink">Preprocessing</a><a c
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>/home/runner/work/braindecode/braindecode/braindecode/preprocessing/preprocess.py:69: UserWarning: Preprocessing choices with lambda functions cannot be saved.
warn(&quot;Preprocessing choices with lambda functions cannot be saved.&quot;)

&lt;braindecode.datasets.moabb.MOABBDataset object at 0x7fa044ed1a20&gt;
&lt;braindecode.datasets.moabb.MOABBDataset object at 0x7f13521e10f0&gt;
</pre></div>
</div>
</section>
Expand Down Expand Up @@ -793,10 +793,10 @@ <h3><a class="toc-backref" href="#id10" role="doc-backlink">Create an EEGClassif
</div>
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span> epoch train_accuracy train_loss valid_acc valid_accuracy valid_loss lr dur
------- ---------------- ------------ ----------- ---------------- ------------ ------ ------
1 0.2639 1.4655 0.2639 0.2639 1.5266 0.0006 1.7685
2 0.3299 1.3119 0.3194 0.3194 1.3948 0.0005 1.6021
3 0.4757 1.1941 0.2986 0.2986 1.3259 0.0002 1.5993
4 0.5625 1.1671 0.3333 0.3333 1.3025 0.0000 1.5886
1 0.2639 1.4655 0.2639 0.2639 1.5266 0.0006 1.7965
2 0.3299 1.3119 0.3194 0.3194 1.3948 0.0005 1.5940
3 0.4757 1.1941 0.2986 0.2986 1.3259 0.0002 1.6496
4 0.5625 1.1671 0.3333 0.3333 1.3025 0.0000 1.6175

&lt;class &#39;braindecode.classifier.EEGClassifier&#39;&gt;[initialized](
module_=============================================================================================================================================
Expand Down Expand Up @@ -850,8 +850,8 @@ <h3><a class="toc-backref" href="#id12" role="doc-backlink">Setting the data aug
<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><a href="../../generated/braindecode.datasets.BaseConcatDataset.html#braindecode.datasets.BaseConcatDataset" title="braindecode.datasets.BaseConcatDataset" class="sphx-glr-backref-module-braindecode-datasets sphx-glr-backref-type-py-class sphx-glr-backref-instance"><span class="n">train_set</span></a><span class="o">.</span><a href="../../generated/braindecode.augmentation.FrequencyShift.html#braindecode.augmentation.FrequencyShift" title="braindecode.augmentation.FrequencyShift" class="sphx-glr-backref-module-braindecode-augmentation sphx-glr-backref-type-py-class sphx-glr-backref-instance"><span class="n">transform</span></a> <span class="o">=</span> <a href="../../generated/braindecode.augmentation.Compose.html#braindecode.augmentation.Compose" title="braindecode.augmentation.Compose" class="sphx-glr-backref-module-braindecode-augmentation sphx-glr-backref-type-py-class sphx-glr-backref-instance"><span class="n">composed_transforms</span></a>
</pre></div>
</div>
<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 17.639 seconds)</p>
<p><strong>Estimated memory usage:</strong> 1022 MB</p>
<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 18.447 seconds)</p>
<p><strong>Estimated memory usage:</strong> 1131 MB</p>
<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-advanced-training-plot-data-augmentation-py">
<div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
<p><a class="reference download internal" download="" href="../../_downloads/1d879df548fa18be8c23d9ca0dc008d4/plot_data_augmentation.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_data_augmentation.ipynb</span></code></a></p>
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Expand Up @@ -620,7 +620,7 @@ <h3><a class="toc-backref" href="#id10" role="doc-backlink">Preprocessing</a><a
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>/home/runner/work/braindecode/braindecode/braindecode/preprocessing/preprocess.py:69: UserWarning: Preprocessing choices with lambda functions cannot be saved.
warn(&quot;Preprocessing choices with lambda functions cannot be saved.&quot;)

&lt;braindecode.datasets.moabb.MOABBDataset object at 0x7f9f820894e0&gt;
&lt;braindecode.datasets.moabb.MOABBDataset object at 0x7f135213a620&gt;
</pre></div>
</div>
</section>
Expand Down Expand Up @@ -1389,8 +1389,8 @@ <h3><a class="toc-backref" href="#id19" role="doc-backlink">References</a><a cla
Journal of Neural Engineering, 18(4), 046020.</p>
</aside>
</aside>
<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 33.063 seconds)</p>
<p><strong>Estimated memory usage:</strong> 886 MB</p>
<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 34.659 seconds)</p>
<p><strong>Estimated memory usage:</strong> 830 MB</p>
<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-advanced-training-plot-data-augmentation-search-py">
<div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
<p><a class="reference download internal" download="" href="../../_downloads/2466f8ec5c733d0bd65e187b45d875cc/plot_data_augmentation_search.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_data_augmentation_search.ipynb</span></code></a></p>
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