feat: update carbon_network submodule #3
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| name: Test Nextflow Workflow | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python 3.9 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.9 | |
| # - name: Install dependencies | |
| # run: | | |
| # # Installing Nextflow | |
| # curl -s https://get.nextflow.io | bash | |
| # mv nextflow /usr/local/bin | |
| # # Installing Conda | |
| # wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh | |
| # chmod +x Miniconda3-latest-Linux-x86_64.sh | |
| # bash ./Miniconda3-latest-Linux-x86_64.sh -b -p $HOME/miniconda | |
| # export PATH="$HOME/miniconda/bin:$PATH" | |
| # conda init bash | |
| # conda config --set always_yes yes --set changeps1 no | |
| # # Install mamba | |
| # conda install -c conda-forge mamba | |
| - name: Set up Conda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| activate-environment: nextflow | |
| environment-file: test/test_environment.yml | |
| auto-activate-base: true | |
| - name: Test Workflow | |
| shell: bash -el {0} | |
| run: | | |
| conda activate nextflow && make run |