Skip to content

Issues: bioperl/bioperl-run

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

34 Open 9 Closed
34 Open 9 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

t/SABlastPlus.t failures with makeblastdb from ncbi-blast+ 2.16.0
#62 opened Jul 30, 2024 by emollier
Where to acquire Helicobacter_pylori.mod needed by t/Genemark.hmm.prokaryotic.t ?
#60 opened Feb 16, 2020 by mr-c
Bug in Eponine test
#59 opened Mar 12, 2019 by dionys
BEDTools issues
#58 opened Feb 8, 2019 by cjfields
Build.PL mentions Bio::Run that does not exist
#57 opened Feb 5, 2019 by carandraug
2
Issue with Bowtie in test suite
#55 opened Jan 26, 2018 by tillea
1
bug in Bio::Tools::Run::Alignment::StandAloneFasta
#53 opened Sep 17, 2017 by cjfields
Test with latest bowtie is failing
#52 opened Sep 16, 2017 by tillea
SABlastPlus tests fail with latest version of BLAST+
#51 opened Sep 11, 2017 by cjfields
'cpgplot' input sequence not recognized
#47 opened Feb 24, 2017 by piatekmj
9
infernal does not contan cmscore since version 1.1
#45 opened Dec 16, 2016 by tillea 1.7.3
1
Index on cpanm?
#41 opened Oct 7, 2016 by keiranmraine
1
DB can't be found
#37 opened Jun 20, 2016 by ksteczk
1
problem in Installing Bio::Seq, Bio::DB::GFF,
#36 opened Feb 7, 2016 by amoltej
6
Bio::Tools::Run::StandAloneBlastPlus --remote database with '/' separator Priority: Normal Status: New Tracker: Bug
#34 opened Oct 8, 2015 by cjfields
1
Bio::Tools::Run::Phylo::Phyml, tree_string Priority: Normal Status: New Tracker: Bug
#33 opened Oct 8, 2015 by cjfields
Undocumented need for Array::Compare. Priority: Normal Status: New Tracker: Bug
#32 opened Oct 8, 2015 by cjfields
2
Bio::Tools::Run::Phylo::Phyml Lacks LG model of AA sequence evolution Priority: Normal Status: New Tracker: Bug
#31 opened Oct 8, 2015 by cjfields
version() not implemented for Bio::Tools::Run::StandAloneBlastPlus Priority: Normal Status: New Tracker: Bug
#30 opened Oct 8, 2015 by cjfields
Bio::Tools::Run::StandAloneBlastPlus tests failing with latest BLAST+ Priority: Normal Status: In Progress Tracker: Bug
#29 opened Oct 8, 2015 by cjfields
3
Bio::Tools::Run::BWA failing tests Priority: Normal Status: New Tracker: Bug
#28 opened Oct 8, 2015 by cjfields
Bio::Tools::Run::Phylo::Phyml -- documented values for -f parameter Priority: Low Status: New Tracker: Bug
#27 opened Oct 8, 2015 by cjfields
Bio::Tools::Run::Phylo::Phyml -- Bootstrap and other confidence measures Priority: Normal Status: New Tracker: Feature
#26 opened Oct 8, 2015 by cjfields
Bio::Tools::Run::StandAloneBlastPlus "entrez_query" option Priority: Normal Status: New Tracker: Bug
#25 opened Oct 8, 2015 by cjfields
3
bioperl-run LVB.pm and LVB.t require updates for LVB version 2.3 Priority: Normal Status: New Tracker: Bug
#24 opened Oct 8, 2015 by cjfields
2
ProTip! no:milestone will show everything without a milestone.