test

bioexcel · Nov 21, 2024 · 1c50011 · 1c50011
1 parent 38f81a2
commit 1c50011
Showing 1 changed file with 6 additions and 2 deletions.
diff --git a/biobb_mem/fatslim/fatslim_membranes.py b/biobb_mem/fatslim/fatslim_membranes.py
@@ -9,6 +9,7 @@
 from biobb_common.tools import file_utils as fu
 import MDAnalysis as mda
 import shutil
+import os
 
 
 class FatslimMembranes(BiobbObject):
@@ -119,8 +120,11 @@ def launch(self) -> int:
 
         # Run Biobb block
         self.run_biobb()
-        print('test', shutil.which("fatslim"))
-        shutil.move(self.tmp_out[:-4]+'_0000.ndx', self.stage_io_dict["out"]["output_ndx_path"])
+        print('TEST', os.listdir(PurePath(self.tmp_out).parent))
+        print('TEST', os.listdir(PurePath(self.tmp_ndx).parent))
+        print('TEST', os.listdir(PurePath(self.tmp_out).parent))
+        print('TEST', shutil.which("fatslim"))
+        os.rename(self.tmp_out[:-4]+'_0000.ndx', self.stage_io_dict["out"]["output_ndx_path"])
         # Copy files to host
         self.copy_to_host()