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<?php include $_SERVER['DOCUMENT_ROOT'].'/views/header.php'; ?> | ||
<div class="container"> | ||
<h1>403. That’s an error.</h1> | ||
<h3>Access Denied/Forbidden.</h3> | ||
</div> | ||
<?php include $_SERVER['DOCUMENT_ROOT'].'/views/footer.php';?> |
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<?php include $_SERVER['DOCUMENT_ROOT'].'/views/header.php'; ?> | ||
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<div class="container"> | ||
<h1>404: Page not Found </h1> | ||
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<h3>Sorry, but the page you are looking for has not been found.</h3> | ||
<h3>Try checking the URL for errors, then hit the refresh button on your browser.</h3> | ||
</div> | ||
<?php include $_SERVER['DOCUMENT_ROOT'].'/views/footer.php';?> |
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<?php | ||
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require_once dirname(__FILE__) .'/config/config.php'; | ||
require_once dirname(__FILE__) . '/trackactivity.php'; | ||
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$errors = ''; | ||
$name = ''; | ||
$email = ''; | ||
$message = ''; | ||
$subject =''; | ||
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if(isset($_POST['submit'])) | ||
{ | ||
$subject = $_POST['SUBJECT']; | ||
$name = $_POST["NAME"]; | ||
$message = $_POST["MESSAGE"]; | ||
$email = $_POST["EMAIL"]; | ||
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if(empty($_SESSION['6_letters_code'] ) || | ||
strcasecmp($_SESSION['6_letters_code'], $_POST['6_letters_code']) != 0) | ||
{ | ||
//Note: the captcha code is compared case insensitively. | ||
//if you want case sensitive match, update the check above to | ||
// strcmp() | ||
$errors .= "\n The captcha code does not match!"; | ||
} | ||
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if(empty($errors)) | ||
{ | ||
//send the email | ||
sendEmails(); | ||
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echo '<script type="text/javascript">'; | ||
echo 'alert("You request has been received and we will contact you soon")'; | ||
echo '</script>'; | ||
} | ||
} | ||
function sendEmails(){ | ||
$subject = $_POST['SUBJECT']; | ||
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require_once dirname(__FILE__) . '/vendor/swiftmailer/swiftmailer/lib/swift_required.php'; | ||
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$from = $_POST["EMAIL"]; | ||
$to = array("[email protected]","[email protected]","[email protected]"); | ||
$body = 'BioCADDIE contact request<br> | ||
----------------------------------------<br> | ||
NAME: '.$_POST["NAME"].'<br> | ||
MESSAGE: '.$_POST["MESSAGE"].'<br> | ||
EMAIL: '.$_POST["EMAIL"]; | ||
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$transport = Swift_SmtpTransport::newInstance('smtp.gmail.com', 465, "ssl") | ||
->setUsername('[email protected]') | ||
->setPassword('biocaddie4050@'); | ||
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$mailer = Swift_Mailer::newInstance($transport); | ||
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$message = Swift_Message::newInstance('bioCaddie Contact us email:' . $subject) | ||
->setFrom(array($from => 'bioCaddie')) | ||
->setTo($to) | ||
->setBody($body) | ||
->setContentType("text/html"); | ||
$mailer->send($message); | ||
} | ||
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?> | ||
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<?php include dirname(__FILE__).'/views/header.php'; ?> | ||
<div class="container" style="background-color:#DCDCDC"> | ||
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<h3 style="text-align:center"> OUR MISSION </h3> | ||
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<p style="text-align:center">Develop a prototype of a data discovery index.</p> | ||
<div class="about_box" style="background-color:white"> | ||
<br> | ||
<p class="about_style"> We at the bioCADDIE (biomedical and healthcare Data Discovery Index Ecosystem) are developing a prototype of a data discovery index (DDI) to help you search and find datasets you’re interested in. Our prototype aims to provide:</p> | ||
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<p class="about_style"> 1. A free, user-friendly means for you to locate data sets of interest.</p> | ||
<p class="about_style"> 2. Standardized, searchable information (metadata) about the contents of a data set.</p> | ||
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<p class="about_style"> You can use the web interface and provide us feedback <a class="hyperlink" href="./feedback.php">here </a> about your search experience. This is a prototype in development and your valuable suggestions and comments will help us to make the system better.</p> | ||
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<p class="about_style"> For more information about bioCADDIE, click <a class="hyperlink" href="https://biocaddie.org/" target="_blank"> here </a></p> | ||
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<p class="about_style" > Contact us:</p> | ||
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<div id='contact_form_errorloc' class='err'></div> | ||
<form method="POST" name="contact_form" | ||
action="<?php echo htmlentities($_SERVER['PHP_SELF']); ?>" class="about_style" data-toggle="validator"> | ||
<div class="about_style" > | ||
<label for="name">Name *</label> | ||
<input type="text" name="NAME" class="form-control" id="pwd" placeholder="Your name" value="<?php echo $name;?>" required> | ||
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<label for="email">E-mail address *</label> | ||
<input type="email" name="EMAIL" class="form-control" id="email" placeholder="Your email" value="<?php echo $email;?>"required> | ||
<div class="form-group"> | ||
<label for="">Subject *</label> | ||
<input type="text" name="SUBJECT" class="form-control" id="subject" value="<?php echo $subject;?>" required > | ||
</div> | ||
<div class="form-group"> | ||
<label for="">Message * </label> | ||
<textarea type="text" name="MESSAGE" class="form-control" id="message" rows="4" required><?php echo htmlspecialchars($message)?></textarea> | ||
</div> | ||
<?php if(!empty($errors)) { | ||
echo "<p class='err' style='color:red'>" . nl2br($errors) . "</p>"; | ||
} ?> | ||
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<p> | ||
<img src="html-contact-form-captcha/captcha_code_file.php?rand=<?php echo rand(); ?>" id='captchaimg' ><br> | ||
<label for='message'>Enter the code above here :</label><br> | ||
<input id="6_letters_code" name="6_letters_code" type="text"><br> | ||
<small>Can't read the image? click <a href='javascript: refreshCaptcha();' class="hyperlink">here</a> to refresh</small> | ||
</p> | ||
<input type="submit" value="Submit" name='submit'> | ||
</div> | ||
</form> | ||
</div> | ||
</div> | ||
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<?php include dirname(__FILE__) . '/views/footer.php'; ?> | ||
<script language='JavaScript' type='text/javascript'> | ||
function refreshCaptcha() | ||
{ | ||
var img = document.images['captchaimg']; | ||
img.src = img.src.substring(0,img.src.lastIndexOf("?"))+"?rand="+Math.random()*1000; | ||
} | ||
</script> | ||
</body> | ||
</html> |
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<?php | ||
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require_once dirname(__FILE__) .'/config/config.php'; | ||
include dirname(__FILE__) . '/views/header.php'; | ||
require_once dirname(__FILE__) . '/search/SearchBuilder.php'; | ||
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require_once dirname(__FILE__) . '/trackactivity.php'; | ||
?> | ||
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<div class="container"> | ||
<div class="row"> | ||
<h3>DataMed Advanced Search Builder</h3> | ||
</div> | ||
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<div style="margin-top: 30px"> | ||
<form action='./search.php' method='get' autocomplete='off' id="search-form"> | ||
<?php include dirname(__FILE__) . '/views/advanced/builder.php'; ?> | ||
</form> | ||
</div> | ||
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</div> | ||
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<?php | ||
/* Page Custom Scripts. */ | ||
$scripts = ["./js/page.scripts/advanced.js"]; | ||
?> | ||
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<?php include dirname(__FILE__) . '/views/footer.php'; ?> | ||
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<?php | ||
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require_once dirname(__FILE__) . '/../config/datasources.php'; | ||
require_once dirname(__FILE__) . '/../search/Repositories.php'; | ||
require_once dirname(__FILE__) . '/../search/ElasticSearch.php'; | ||
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$query = filter_input(INPUT_GET, "query", FILTER_SANITIZE_STRING); | ||
if (is_ajax() && isset($query)) { | ||
$total_num = 0; | ||
$repositoryObj = new Repositories(); | ||
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$search_repository = new ElasticSearch(); | ||
$search_repository->search_fields = $repositoryObj->getSearchFields(); | ||
$search_repository->facets_fields = ['_index']; | ||
$search_repository->facet_size = 20; | ||
$search_repository->query = $query; | ||
$search_repository->filter_fields = []; | ||
$search_repository->es_index = getElasticSearchIndexes(); | ||
$search_repository->es_type = ''; | ||
$esResults= $search_repository->getSearchResult(); | ||
$repositories_counts = []; | ||
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foreach ($esResults['aggregations']['_index']['buckets'] as $bucket) { | ||
$key = explode('_', $bucket['key'])[0]; | ||
$repositories_counts[$key] = $bucket['doc_count']; | ||
} | ||
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foreach ($repositoryObj->getRepositories() as $repository) { | ||
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/*$search_repository = new ElasticSearch(); | ||
$search_repository->search_fields = $repository->search_fields; | ||
$search_repository->facets_fields = $repository->facets_fields; | ||
$search_repository->query = $query; | ||
$search_repository->filter_fields = []; | ||
$search_repository->es_index = $repository->index; | ||
$search_repository->es_type = $repository->type; | ||
$result = $search_repository->getSearchResult(); | ||
$repository->num = $result['hits']['total']; | ||
*/ | ||
if(array_key_exists($repository->index,$repositories_counts)) { | ||
$repository->num = $repositories_counts[$repository->index]; | ||
} | ||
else { | ||
$repository->num = 0; | ||
} | ||
// $total_num = $total_num + $repository->num; | ||
} | ||
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$elasticSearchIndexes = ''; | ||
$mappings = getDatatypesMapping(); | ||
foreach ($mappings as $index) { | ||
if (is_array($index)) { | ||
foreach ($index as $item) { | ||
$elasticSearchIndexes .= $item . ','; | ||
} | ||
} else { | ||
$elasticSearchIndexes .= $index . ','; | ||
} | ||
} | ||
$indexes = substr($elasticSearchIndexes, 0, -1); | ||
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/* $search_all_repository = new ElasticSearch(); | ||
$search_all_repository->search_fields = $repositoryObj->getSearchFields(); | ||
$search_all_repository->facets_fields = $repository->facets_fields; | ||
$search_all_repository->query = $query; | ||
$search_all_repository->filter_fields = []; | ||
$search_all_repository->es_index = $indexes; | ||
$search_all_repository->es_type = ''; | ||
$all_result = $search_all_repository->getSearchResult(); | ||
$total_num = $all_result['hits']['total']; | ||
$all_items = $all_result['hits']['hits'];*/ | ||
$total_num = $esResults['hits']['total']; | ||
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$all_items = $esResults['hits']['hits']; | ||
// For datasets href | ||
$href = '"search.php?query=' . $query . '"'; | ||
$all_num = '(' . ($total_num) . ')'; | ||
$result_href = ''; | ||
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// Caculate each datatypes item number | ||
$datatypes_num = []; | ||
foreach (getDatatypes() as $datatype) { | ||
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$dataindex = $mappings[$datatype]; | ||
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$c = 0; | ||
foreach ($repositoryObj->getRepositories() as $repository) { | ||
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if (is_array($dataindex)) { | ||
foreach ($dataindex as $item) { | ||
if ($repository->index == $item) { | ||
$c = $c + $repository->num; | ||
} | ||
} | ||
} else { | ||
if ($repository->index == $dataindex) { | ||
$c = $c + $repository->num; | ||
} | ||
} | ||
} | ||
$datatypes_num[$datatype] = $c; | ||
} | ||
$fianlResult = array('repository' => $repositoryObj->getRepositories(), 'datatypes' => $datatypes_num); | ||
echo json_encode($fianlResult); | ||
} | ||
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// Function to check if the request is an AJAX request | ||
function is_ajax() { | ||
return isset($_SERVER['HTTP_X_REQUESTED_WITH']) && strtolower($_SERVER['HTTP_X_REQUESTED_WITH']) == 'xmlhttprequest'; | ||
} | ||
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<?php | ||
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require_once '../dbcontroller.php'; | ||
require_once '../database/Search.php'; | ||
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if (session_status() == PHP_SESSION_NONE) { | ||
session_start(); | ||
} | ||
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$objDBController = new DBController(); | ||
$dbconn=$objDBController->getConn(); | ||
$search = new Search(); | ||
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if(!empty($_POST['query'])) { | ||
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foreach($_POST['query'] as $check) { | ||
$search->setSearchId($check); | ||
if($search->deleteSearch($dbconn)){ | ||
echo "ok"; | ||
} | ||
//echo $check; | ||
} | ||
} |
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<?php | ||
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require_once '../dbcontroller.php'; | ||
require_once '../database/Search.php'; | ||
require_once '../config/config.php'; | ||
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$objDBController = new DBController(); | ||
$dbconn=$objDBController->getConn(); | ||
$search = new Search(); | ||
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if(!empty($_POST['query'])) { | ||
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foreach($_POST['query'] as $check) { | ||
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$search->setDate(explode("|",$check)[2]); | ||
$search->setSearchTerm(explode("|",$check)[0]); | ||
$search->setSearchType(explode("|",$check)[1]); | ||
$search->setUemail($_SESSION['email']); | ||
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if($search->saveSearch($dbconn)){ | ||
echo "ok"; | ||
} | ||
} | ||
} | ||
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<?php | ||
/** | ||
* Created by PhpStorm. | ||
* User: rliu1 | ||
* Date: 3/8/16 | ||
* Time: 1:00 PM | ||
*/ | ||
require_once '../dbcontroller.php'; | ||
require_once '../config/config.php'; | ||
require_once '../database/StudyConsent.php'; | ||
date_default_timezone_set('America/Chicago'); | ||
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$objDBController = new DBController(); | ||
$dbconn=$objDBController->getConn(); | ||
$consent = new StudyConsent(); | ||
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if(!empty($_POST['email'])) { | ||
$consent->setEmail($_POST['email']); | ||
$consent->setConsent(1); | ||
$consent->setConsentTime(date("Y-m-d H:i:s")); | ||
$consent->setUsername($_SESSION['email']); | ||
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if($consent->saveConsent($dbconn)){ | ||
echo "ok"; | ||
} | ||
} |
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