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[Adam - 2401] Refactoring Error Messages #2403

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[Adam - 2401] Refactoring Error Messages #2403

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9 changes: 6 additions & 3 deletions adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
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Original file line number Diff line number Diff line change
Expand Up @@ -176,6 +176,9 @@ object MdTag {

case (CigarOperator.INSERTION | CigarOperator.H | CigarOperator.S | CigarOperator.P, _) =>
cigarIdx += 1

case _ =>
throw new UnsupportedOperationException(s"Unsupported CigarOperator: ${cigarElement.getOperator}")
}
}
new MdTag(referenceStart, matches, mismatches, deletions)
Expand Down Expand Up @@ -245,7 +248,7 @@ object MdTag {
readPos += cigarElement.getLength
}
if (cigarElement.getOperator.consumesReferenceBases) {
throw new IllegalArgumentException("Cannot handle operator: " + cigarElement.getOperator)
throw new UnsupportedOperationException("Cannot handle operator: " + cigarElement.getOperator)
}
}
}
Expand Down Expand Up @@ -339,7 +342,7 @@ object MdTag {
readPos += cigarElement.getLength
}
if (cigarElement.getOperator.consumesReferenceBases) {
throw new IllegalArgumentException("Cannot handle operator: " + cigarElement.getOperator)
throw new UnsupportedOperationException("Cannot handle operator: " + cigarElement.getOperator)
}
}
}
Expand Down Expand Up @@ -511,7 +514,7 @@ case class MdTag(
readPos += insLength
}
if (cigarElement.getOperator.consumesReferenceBases) {
throw new IllegalArgumentException("Cannot handle operator: " + cigarElement.getOperator)
throw new UnsupportedOperationException("Cannot handle operator: " + cigarElement.getOperator)
}
}
}
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