hg38 liftOver fix for methylCC::estimatecc()

ben-laufer · Apr 26, 2020 · 4af9ef7 · 4af9ef7
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commit 4af9ef7
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: DMRichR
 Title: Enrich your DMR analysis
-Version: 1.3.0
+Version: 1.3.0.1
 Authors@R: c(
   person("Ben", "Laufer", email = "[email protected]", role = c("aut", "cre")),
   person("Charles", "Mordaunt", email = "[email protected]", role = "ctb"),

diff --git a/exec/DM.R b/exec/DM.R
@@ -811,7 +811,7 @@ if(cellComposition == T & (genome == "hg38" | genome == "hg19")){
                        include_cpgs = FALSE,
                        include_dmrs = TRUE)
 
-  methylCC <- bs.filtered.bsseq %>%
+  methylCC <- bs.filtered.bsseq.cc %>%
     methylCC::estimatecc(include_cpgs = FALSE,
                          include_dmrs = TRUE,
                          find_dmrs_object = ccDMRs)