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@bcgsc

BC Cancer Canada's Michael Smith Genome Sciences Centre

Sequencing Centre for Genomics and Bioinformatics Research

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  1. RNA-Bloom RNA-Bloom Public

    🌺 reference-free transcriptome assembly for short and long reads

    Java 85 7

  2. LongStitch LongStitch Public

    Correct and scaffold assemblies using long reads

    Makefile 43 7

  3. ntRoot ntRoot Public

    🌳 Human ancestry inference from genomic data

    Python 2

  4. btllib btllib Public

    Bioinformatics Technology Lab common code library

    C++ 21 5

  5. ntEdit ntEdit Public

    ✏️ Genome assembly polishing & SNV detection

    C++ 62 9

  6. goldrush goldrush Public

    Linear-time de novo Long Read Assembler

    C++ 32 2

Repositories

Showing 10 of 114 repositories
  • pori_graphkb_api Public

    REST API for the GraphKB project

    bcgsc/pori_graphkb_api’s past year of commit activity
    JavaScript 4 GPL-3.0 1 6 0 Updated Jul 3, 2024
  • pori_ipr_client Public

    Integrated Pipeline Reports (IPR) client. The web interface for the reporting application as part of PORI

    bcgsc/pori_ipr_client’s past year of commit activity
    TypeScript 8 GPL-3.0 1 0 0 Updated Jul 2, 2024
  • abyss Public

    🔬 Assemble large genomes using short reads

    bcgsc/abyss’s past year of commit activity
    C++ 304 101 5 1 Updated Jul 2, 2024
  • btl Public

    🔬 Bioinformatics Technology Lab, Genome Sciences Centre

    bcgsc/btl’s past year of commit activity
    HTML 1 3 4 0 Updated Jul 2, 2024
  • ntRoot Public

    🌳 Human ancestry inference from genomic data

    bcgsc/ntRoot’s past year of commit activity
    Python 2 GPL-3.0 0 0 0 Updated Jul 2, 2024
  • pori_python Public
    bcgsc/pori_python’s past year of commit activity
    Python 0 GPL-3.0 1 0 1 Updated Jul 1, 2024
  • pori_ipr_api Public

    Integrated Pipeline Reports (IPR) API, the reporting API as part of the PORI platform

    bcgsc/pori_ipr_api’s past year of commit activity
    JavaScript 8 0 0 1 Updated Jun 28, 2024
  • ntedit_sealer_protocol Public

    Efficient targeted error resolution and automated finishing of long-read genome assemblies

    bcgsc/ntedit_sealer_protocol’s past year of commit activity
    Makefile 3 1 0 0 Updated Jun 26, 2024
  • pori_graphkb_python Public

    Python adapter package for querying the GraphKB API

    bcgsc/pori_graphkb_python’s past year of commit activity
    Python 7 GPL-3.0 3 0 3 Updated Jun 26, 2024
  • ntSynt Public

    Detecting multi-genome synteny using minimizer graph mapping

    bcgsc/ntSynt’s past year of commit activity
    Python 61 GPL-3.0 1 1 0 Updated Jun 24, 2024
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