Skip to content
@bcbio

Blue Collar Bioinformatics

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

Pinned Loading

  1. bcbioR bcbioR Public

    R package with well defined templates for most common pipelines

    R 1 1

  2. bcbio-nextgen bcbio-nextgen Public

    Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

    Python 979 356

  3. cloudbiolinux cloudbiolinux Public

    Forked from chapmanb/cloudbiolinux

    CloudBioLinux: configure virtual (or real) machines with tools for biological analyses

    Python

  4. bcbio-utils bcbio-utils Public

    Helper scripts for bcbio-nextgen

    Python 2

Repositories

Showing 10 of 20 repositories
  • bcbioR Public

    R package with well defined templates for most common pipelines

    bcbio/bcbioR’s past year of commit activity
    R 1 1 17 0 Updated Jul 3, 2024
  • bcbioR-test-data Public

    repository to host small dataset for bcbioR package

    bcbio/bcbioR-test-data’s past year of commit activity
    0 MIT 0 0 0 Updated May 21, 2024
  • bcbio.github.io Public

    Blue Collar Bioinformatics website

    bcbio/bcbio.github.io’s past year of commit activity
    HTML 9 3 0 0 Updated Apr 30, 2024
  • bcbio-nextgen Public

    Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

    bcbio/bcbio-nextgen’s past year of commit activity
    Python 979 MIT 356 126 3 Updated Apr 28, 2024
  • hivdrm Public

    Detect HIV Drug Resitant Mutations using amplicon sequencing data

    bcbio/hivdrm’s past year of commit activity
    Python 1 MIT 1 0 0 Updated May 20, 2023
  • bcbio_validations Public

    Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses

    bcbio/bcbio_validations’s past year of commit activity
    HTML 31 11 0 0 Updated Feb 12, 2022
  • bcbio_validation_workflows Public

    A community menagarie of automated variant validations using bcbio and the Common Workflow Language

    bcbio/bcbio_validation_workflows’s past year of commit activity
    Common Workflow Language 20 MIT 12 0 0 Updated Nov 3, 2021
  • bcbio_docker Public

    Automated Docker builds for bcbio

    bcbio/bcbio_docker’s past year of commit activity
    Dockerfile 7 MIT 4 2 0 Updated Apr 22, 2021
  • bcbio-utils Public

    Helper scripts for bcbio-nextgen

    bcbio/bcbio-utils’s past year of commit activity
    Python 2 MIT 0 2 0 Updated Mar 25, 2021
  • scramble Public Forked from GeneDx/scramble
    bcbio/scramble’s past year of commit activity
    R 0 12 0 0 Updated Oct 28, 2020
View all repositories

Top languages

Loading…

Most used topics

Loading…