Add population support to GRG samples #3
Merged
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Collaborator
dcdehaas
commented
Jul 22, 2024
dcdehaas
commented
- Add new argument to "grg construct", add unit tests
- "grg construct --population-ids file:field" now attaches populations to the data.
- Add population ID map support to grgl executable
- Set populationID on the sample nodes based on the individual IDs.
- Unit tests for the population ID handling in GRG construction and the associated helper functions.
- Add individual ID support to MutationIterator
- Add individual filtering to gconverter
* Add new argument to "grg construct", add unit tests * "grg construct --population-ids <file:field>" now attaches populations to the data. * Add population ID map support to grgl executable * Set populationID on the sample nodes based on the individual IDs. * Unit tests for the population ID handling in GRG construction and the associated helper functions. * Add individual ID support to MutationIterator * Add individual filtering to gconverter
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.