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document edit delete hydrogen
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aoterodelaroza committed Jul 17, 2024
1 parent 12f8f82 commit 2cdf059
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1 change: 1 addition & 0 deletions _critic2/13_syntax.md
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Expand Up @@ -329,6 +329,7 @@ ECON
EDIT
DELETE {ATOM|ATOMS} id1.i id2.i ...
DELETE {MOLECULE|MOLECULES} id1.i id2.i ...
DELETE {HYDROGEN|HYDROGENS}
MOVE id.i x.r y.r z.r [BOHR|ANG] [RELATIVE]
ENDEDIT
~~~
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3 changes: 3 additions & 0 deletions _critic2/98_manual/13_structure.md
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Expand Up @@ -725,6 +725,7 @@ crystal structure. The syntax of the EDIT environment is:
EDIT
DELETE {ATOM|ATOMS} id1.i id2.i ...
DELETE {MOLECULE|MOLECULES} id1.i id2.i ...
DELETE {HYDROGEN|HYDROGENS}
MOVE id.i x.r y.r z.r [BOHR|ANG] [RELATIVE]
ENDEDIT
~~~
Expand All @@ -739,6 +740,8 @@ structure. The list of possible editing actions includes:
IDs `id1.i`, `id2.i`, etc. After the molecules are deleted,
recalculate the symmetry operations and bond connectivity.

* `DELETE {HYDROGEN|HYDROGENS}`: delete all hydrogens.

* `MOVE id.i x.r y.r z.r [BOHR|ANG] [RELATIVE]`: moves atom with
complete list ID `id.i` to position `x.r y.r z.r`. If the system is
a crystal, the coordinates are fractional; if it is a molecule,
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