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Docs: Added metrics table + paper citation
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Expand Up @@ -117,8 +117,18 @@ https://doi.org/10.1371/journal.pone.0282110
* Lee et al., Robust End-to-End Focal Liver Lesion Detection Using Unregistered Multiphase Computed Tomography Images, IEEE Transactions on Emerging Topics in Computational Intelligence, 2021, https://doi.org/10.1109/TETCI.2021.3132382
* Survarachakan et al., Effects of Enhancement on Deep Learning Based Hepatic Vessel Segmentation, Electronics, 2021, https://doi.org/10.3390/electronics10101165

## Segmentation performance metrics
The segmentation models were evaluated on an internal dataset against manual annotations. See Table E in S4 Appendix in the Supporting Information of [this paper](https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0282110) for more information. The table presented there can also be seen below:

| Class | DSC | HD95 |
|--------|-------------------|------------------|
| Parenchyma | 0.946±0.046 | 10.122±11.032 |
| Vessels | 0.355±0.090 | 24.872±5.161 |

The parenchyma segmentation model was trained on the LITS dataset, whereas the vessel model was trained on a local dataset. The LITS dataset is openly accessible and can be downloaded from [here](https://competitions.codalab.org/competitions/17094).

## Acknowledgements
If you found this tool helpful in your research, please, consider citing it:
If you found this tool helpful in your research, please, consider citing it (see [here](https://zenodo.org/badge/latestdoi/238680374) for more information on how to cite):
<pre>
@software{andre_pedersen_2023_7574587,
author = {André Pedersen and Javier Pérez de Frutos},
Expand All @@ -132,6 +142,19 @@ If you found this tool helpful in your research, please, consider citing it:
}
</pre>

Information on how to cite can be found [here](https://zenodo.org/badge/latestdoi/238680374).

The model was trained on the LITS dataset. The dataset is openly accessible and can be downloaded from [here](https://competitions.codalab.org/competitions/17094).
In addition, the segmentation performance of the tool was presented in [this paper](https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0282110), thus, cite this tool as well if that is of relevance for you study:
<pre>
@article{perezdefrutos2022ddmr,
title = {Learning deep abdominal CT registration through adaptive loss weighting and synthetic data generation},
author = {Pérez de Frutos, Javier AND Pedersen, André AND Pelanis, Egidijus AND Bouget, David AND Survarachakan, Shanmugapriya AND Langø, Thomas AND Elle, Ole-Jakob AND Lindseth, Frank},
journal = {PLOS ONE},
publisher = {Public Library of Science},
year = {2023},
month = {02},
volume = {18},
doi = {10.1371/journal.pone.0282110},
url = {https://doi.org/10.1371/journal.pone.0282110},
pages = {1-14},
number = {2}
}
</pre>

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